View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3395R-Insertion-9 (Length: 205)

Name: NF3395R-Insertion-9
Description: NF3395R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3395R-Insertion-9
NF3395R-Insertion-9
[»] chr7 (7 HSPs)
chr7 (13-102)||(22572419-22572508)
chr7 (13-89)||(31577226-31577302)
chr7 (10-102)||(4303416-4303509)
chr7 (13-102)||(4668196-4668285)
chr7 (14-70)||(5678275-5678331)
chr7 (14-70)||(5703327-5703383)
chr7 (13-92)||(32053011-32053089)
[»] chr2 (5 HSPs)
chr2 (13-102)||(18725624-18725713)
chr2 (10-102)||(44675252-44675344)
chr2 (13-72)||(8781482-8781541)
chr2 (10-82)||(5841270-5841342)
chr2 (13-79)||(22264404-22264470)
[»] chr6 (9 HSPs)
chr6 (17-94)||(11190471-11190548)
chr6 (13-102)||(2339082-2339168)
chr6 (22-90)||(8568633-8568701)
chr6 (9-85)||(19474670-19474746)
chr6 (10-102)||(26571116-26571208)
chr6 (17-102)||(2939723-2939808)
chr6 (13-102)||(13645840-13645929)
chr6 (15-76)||(27142533-27142594)
chr6 (13-77)||(19237035-19237099)
[»] chr5 (4 HSPs)
chr5 (10-93)||(19677170-19677253)
chr5 (13-103)||(35160757-35160847)
chr5 (10-90)||(7775383-7775463)
chr5 (55-103)||(22668464-22668512)
[»] chr4 (8 HSPs)
chr4 (10-104)||(13085120-13085215)
chr4 (13-86)||(38223074-38223147)
chr4 (13-102)||(19684764-19684853)
chr4 (13-77)||(9596911-9596975)
chr4 (10-82)||(54239573-54239645)
chr4 (13-97)||(22988505-22988590)
chr4 (22-97)||(22716637-22716712)
chr4 (13-103)||(2053037-2053127)
[»] chr3 (9 HSPs)
chr3 (11-77)||(4580530-4580596)
chr3 (10-98)||(20398434-20398522)
chr3 (13-104)||(25340111-25340202)
chr3 (12-102)||(19949971-19950061)
chr3 (24-103)||(1697030-1697109)
chr3 (13-102)||(33620039-33620126)
chr3 (10-102)||(40593474-40593565)
chr3 (17-72)||(41218777-41218832)
chr3 (22-98)||(33528047-33528123)
[»] chr1 (7 HSPs)
chr1 (13-102)||(42071352-42071441)
chr1 (15-102)||(50004095-50004182)
chr1 (33-103)||(49044165-49044235)
chr1 (10-90)||(11923856-11923936)
chr1 (12-86)||(16261581-16261655)
chr1 (13-72)||(42646644-42646699)
chr1 (31-76)||(45085734-45085779)
[»] chr8 (8 HSPs)
chr8 (13-100)||(15081540-15081627)
chr8 (10-77)||(12310828-12310895)
chr8 (13-64)||(38082155-38082206)
chr8 (20-102)||(9295310-9295392)
chr8 (13-91)||(10456238-10456316)
chr8 (120-178)||(26563812-26563870)
chr8 (13-77)||(18180738-18180803)
chr8 (13-69)||(4360868-4360924)
[»] scaffold0251 (1 HSPs)
scaffold0251 (13-70)||(8218-8275)


Alignment Details
Target: chr7 (Bit Score: 62; Significance: 5e-27; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 22572508 - 22572419
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||| ||||||||    
T  22572508 aaacccttatttgatagatttgtcgcttgcaacctgtctgtttatcttttaggtttagcgcttgctaatccttgcttccgttctgcgtca 22572419  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 31577302 - 31577226
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttactt 89  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||| || ||||||||    
T  31577302 aaacccttatttgataggtttgtcgcttgcaacctatctgtttatcttttaggtttagcgcttgctaacccttactt 31577226  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 4303416 - 4303509
Alignment:
Q  10 cgaaaacccttatttgataggtttgt-cgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||| || | || |||| ||||| ||| ||||||    
T  4303416 cgaaaacccttatttaataggtttgttcgcttgcaacctgtctctttatcttttaggtttagcgcttactaacccttgcttccataccgcgtca 4303509  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 4668285 - 4668196
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||||||| ||||||||||||||| || ||| ||| ||||||||||||||||| | ||||| || |||| |||||||  |||||||    
T  4668285 aaacccttatttaataggtttgtcgcttacatcctttctgtttatcttttaggtttaacatttgctaaaccttgcttccgtgatgcgtca 4668196  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5678331 - 5678275
Alignment:
Q  14 aacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttag 70  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||    
T  5678331 aacccttatttgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttag 5678275  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 5703383 - 5703327
Alignment:
Q  14 aacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttag 70  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||    
T  5703383 aacccttatttgataggtttgtcgcttgtaacctgtctgtttatcttttaagtttag 5703327  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 32053011 - 32053089
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccg 92  Q
    |||||||| ||||| || |||||||||||||   ||||| |||||||||||||||||||| |||| ||||||||||||||    
T  32053011 aaaccctt-tttgacagatttgtcgcttgcaaattgtctgtttatcttttaggtttagcgcttgctaatccttacttccg 32053089  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 18725713 - 18725624
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||  || |||| ||||||| ||||||||    
T  18725713 aaacctttatttgataggtttgtcgcttgcagcctgtctgtttatcttttaagtttagcgtttgttaacccttgcttccgttctgcgtca 18725624  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 44675344 - 44675252
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||| |||||||| || |||| ||||| |||| |||||    
T  44675344 cgaaaacccttatttgataggtatgtcgcttgcaacctgtctgtttatcttttatgtttggcgtttgctaacccttgcttccatactacgtca 44675252  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 8781482 - 8781541
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcg 72  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  8781482 aaacccttatttgataggtttgtcgcttgcaacctgtctgtttatcttttaggtttagcg 8781541  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 5841270 - 5841342
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatc 82  Q
    ||||||||| | ||||| |||||||||||||||| | ||| | ||||||||||||||||||||||||| ||||    
T  5841270 cgaaaacccctgtttgacaggtttgtcgcttgcaacttgtatgtttatcttttaggtttagcgtttgctaatc 5841342  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 22264404 - 22264470
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgcca 79  Q
    ||||| ||||| |||||||||||| |||||| ||||||||||||||| ||||||||| || ||||||    
T  22264404 aaacctttattcgataggtttgtctcttgcaacctgtctctttatctattaggtttaacgcttgcca 22264470  T

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Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 11190471 - 11190548
Alignment:
Q  17 ccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgta 94  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| || |||| ||||||||    
T  11190471 ccttatttgataggtttgtcgcttgcaacctgtctctttatattttaggtttagtgtttgctaacccttgcttccgta 11190548  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 2339168 - 2339082
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||||| ||||| ||||||||||||||| |||||  ||||||||||||| |||| || |||||||||||| ||||||||    
T  2339168 aaacccttatttgatagatttgt-gcttgcagcctgtctgtttat--tttaggtttagcgcttgctaacccttacttccgtcctgcgtca 2339082  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 8568701 - 8568633
Alignment:
Q  22 tttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttc 90  Q
    ||||| |||||||| ||||||| | ||||| ||||||||||||||||||||||||| ||||||| ||||    
T  8568701 tttgacaggtttgtagcttgcaacttgtctgtttatcttttaggtttagcgtttgctaatccttgcttc 8568633  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 19474746 - 19474670
Alignment:
Q  9 tcgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatcctt 85  Q
    |||||||||||||||| ||||||||||| |||||| ||| | | |||||||||||| ||||||| |||| |||||||    
T  19474746 tcgaaaacccttatttaataggtttgtctcttgcaacctatatgtttatcttttagctttagcgcttgctaatcctt 19474670  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 26571116 - 26571208
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||| ||||| |||| ||||||||||||| ||||||| ||||||||||| |||||||| |||| |  |||  ||||||| ||||||||    
T  26571116 cgaaaacccctatttaatagatttgtcgcttgcaacctgtctatttatcttttaagtttagcgcttgctatccctatcttccgttctgcgtca 26571208  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 2939808 - 2939723
Alignment:
Q  17 ccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||||||||||||||| | ||||| ||||| |  |||||||  || |||| || |||| ||||||||||||||||    
T  2939808 ccttatttgataggtttgtcgcttgcaacatgtctgtttatttgataggtttgtcgcttgctaacccttgcttccgtactgcgtca 2939723  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 13645929 - 13645840
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||||||| |||||||||| |||||||  |||||| ||||||||||||| | |||| |||| || |||| ||||| | ||||||||    
T  13645929 aaacccttatttaataggtttgttgcttgcaatctgtctgtttatcttttaggctaagcgcttgctaacccttgcttccattctgcgtca 13645840  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 27142594 - 27142533
Alignment:
Q  15 acccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttg 76  Q
    ||||||| ||||  ||||||||||||||| | ||||| ||||||| ||||||||||||||||    
T  27142594 acccttaattgactggtttgtcgcttgcaacttgtctatttatctcttaggtttagcgtttg 27142533  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 19237035 - 19237099
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgc 77  Q
    |||||||||||| |||  ||| ||||||||| ||| | | |||||||||||||||||||||||||    
T  19237035 aaacccttatttaatatatttatcgcttgcaacctatttgtttatcttttaggtttagcgtttgc 19237099  T

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Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 19677253 - 19677170
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgt 93  Q
    ||||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||| |||||| |||| ||||||| |||||||    
T  19677253 cgaaaacccttatttgaaaggtttgtcgcttgcaacctatctgtttatcttttaggcttagcgcttgctaatccttgcttccgt 19677170  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 35160847 - 35160757
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcac 103  Q
    |||||||||||||| |||||||||| ||||| | ||||| |||||||||||||||||| |||||  ||||||| |||| || |||||||||    
T  35160847 aaacccttatttgacaggtttgtcgtttgcaacttgtctgtttatcttttaggtttagtgtttgttaatccttgcttctgttctgcgtcac 35160757  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7775383 - 7775463
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttc 90  Q
    |||||||| || ||||| |||||||| ||||||| | ||||| ||||||||||||||||| ||||||| ||||||| ||||    
T  7775383 cgaaaacctttttttgacaggtttgtagcttgcaacttgtctgtttatcttttaggtttaacgtttgctaatccttgcttc 7775463  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 22668512 - 22668464
Alignment:
Q  55 tatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcac 103  Q
    |||||||||||||||||| |||| || |||| |||| ||||||||||||    
T  22668512 tatcttttaggtttagcgcttgctaacccttgcttctgtactgcgtcac 22668464  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 13085215 - 13085120
Alignment:
Q  10 cgaaaacccttattt-gataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcact 104  Q
    ||||||||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||| |||| ||  ||| ||||||| ||||||||||    
T  13085215 cgaaaacccttattttgataggtttgtcgcttgcaacctgtcagtttatcttttaggtttagcgcttgcgaactcttgcttccgtgctgcgtcact 13085120  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 38223147 - 38223074
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatcctta 86  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||| || |||||    
T  38223147 aaacccttatttgataggtttgtcgtttgcagcctatctatttatcttttaggtttagcatttgctaaccctta 38223074  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 19684853 - 19684764
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||| ||||||||||||||||||||||  |||||| |||||||||||||||||||| |||| || ||||  ||||||  |||||||    
T  19684853 aaacccttgtttgataggtttgtcgcttgcaaactgtctgtttatcttttaggtttagcgcttgctaacccttgtttccgttttgcgtca 19684764  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 9596911 - 9596975
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgc 77  Q
    ||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||||||||| ||||    
T  9596911 aaacccttatttgataggtttatcgtttgcaacctgtctttttatcttttaggtttagcgcttgc 9596975  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 54239573 - 54239645
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatc 82  Q
    ||||||||||||||||||||||||||| |||| | | ||||| |||| || ||||||||||||||||| ||||    
T  54239573 cgaaaacccttatttgataggtttgtcccttgtaacttgtctgtttacctcttaggtttagcgtttgctaatc 54239645  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 22988590 - 22988505
Alignment:
Q  13 aaacccttattt-gataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactg 97  Q
    |||||||| ||| ||||||||||||||||||| ||||||  |||||||||||| |||||| ||||  ||  |||||||||||||||    
T  22988590 aaacccttttttcgataggtttgtcgcttgcaacctgtcagtttatcttttagatttagcttttggtaactcttacttccgtactg 22988505  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 22716637 - 22716712
Alignment:
Q  22 tttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactg 97  Q
    |||||||||||||||||||||| ||||||  ||||| ||||||||||||| ||||  ||  |||||||||| ||||    
T  22716637 tttgataggtttgtcgcttgcaacctgtcagtttatattttaggtttagcttttggtaactcttacttccgcactg 22716712  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 2053127 - 2053037
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcac 103  Q
    ||||||||||||||||| ||||||||||||| | ||||| |||||   ||||||||| |  |||| || |||||||||||| ||| |||||    
T  2053127 aaacccttatttgatagatttgtcgcttgcaacttgtctgtttattcgttaggtttaacacttgctaacccttacttccgttctgggtcac 2053037  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 4580530 - 4580596
Alignment:
Q  11 gaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgc 77  Q
    ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||||    
T  4580530 gaaaacccttatttgataggtttgtcgcttgcaacctgtgtgtttatcttttaggtttagcgcttgc 4580596  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 20398522 - 20398434
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgc 98  Q
    ||||||||||||||||||||  |||||||||||| |||||||  ||||||||||||||||||| |||| ||| ||| ||||||| ||||    
T  20398522 cgaaaacccttatttgatagacttgtcgcttgcaacctgtctgattatcttttaggtttagcgcttgctaattcttgcttccgttctgc 20398434  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 25340202 - 25340111
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcact 104  Q
    ||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||| ||||||  ||||||| ||||| |  |||||||||    
T  25340202 aaacccttatttgataggtttgttgcgtgcaacctgtctgtttatcttttaggtttaacgtttgttaatccttgcttcctttatgcgtcact 25340111  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 19949971 - 19950061
Alignment:
Q  12 aaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||||| |||||||||||||| | | ||| |||||||||||||||||||| |||| || ||||  ||||||||| |||||    
T  19949971 aaaacccttatttgataagtttgtcgcttgcaacttatctgtttatcttttaggtttagcgcttgctaacccttgtttccgtactacgtca 19950061  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 1697109 - 1697030
Alignment:
Q  24 tgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcac 103  Q
    |||||||||||||||||||| ||||||| ||||||||| | ||||||||||||  ||||||| |||| || |||||||||    
T  1697109 tgataggtttgtcgcttgcaacctgtctatttatctttcatgtttagcgtttgataatccttgcttctgttctgcgtcac 1697030  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 33620126 - 33620039
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||||||||||||||||  |||||||||  ||||| ||||  |||||||||||| |||||| ||||||| |||||||  |||||||    
T  33620126 aaacccttatttgataggttttgcgcttgcagattgtctgttta--ttttaggtttagagtttgctaatccttgcttccgttttgcgtca 33620039  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 40593565 - 40593474
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||||||||||||||||||||||||||||||||| || |||| ||| | |||| ||||||||| || | || |||| |||||||  |||||||    
T  40593565 cgaaaacccttatttgataggtttgtcgcttgcaacccgtctgttt-tttttttggtttagcgcttactaacccttgcttccgttatgcgtca 40593474  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 41218777 - 41218832
Alignment:
Q  17 ccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcg 72  Q
    |||||||||||||||||||||||| || ||| ||| |||||||||||| |||||||    
T  41218777 ccttatttgataggtttgtcgcttacaacctatctatttatcttttagatttagcg 41218832  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 33528123 - 33528047
Alignment:
Q  22 tttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgc 98  Q
    ||||| ||||||||||||| || | | ||| ||||||||||| ||||| || |||| ||||||| ||||||| ||||    
T  33528123 tttgacaggtttgtcgcttacaacttatctatttatcttttaagtttaacgcttgctaatccttgcttccgttctgc 33528047  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 42071441 - 42071352
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    |||| ||||||||||||||||||| |||| | | ||||| |||||||||||||||||||| |||  || |||| ||||||| ||||||||    
T  42071441 aaacgcttatttgataggtttgtcacttgtaacatgtctgtttatcttttaggtttagcgcttgttaacccttgcttccgttctgcgtca 42071352  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 50004182 - 50004095
Alignment:
Q  15 acccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||||||||||||||||| | ||||| ||||||| |||||||||||| |||| |  |||| |||| ||||| |||| ||||||||    
T  50004182 acccttatttgataggtttgttgtttgcaacctgtctatttatcttttagatttaacacttgctaatctttactcccgttctgcgtca 50004095  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 49044165 - 49044235
Alignment:
Q  33 tgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtcac 103  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||| || |||| ||||||| |||| ||||    
T  49044165 tgtcgcttgcagcctatctgtttatcttttaggtttagcgcttgctaacccttgcttccgtcctgcatcac 49044235  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 11923856 - 11923936
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttc 90  Q
    |||||||| || ||||| |||||||| |||| ||   ||||| ||||||||||||||||| ||||||| ||||||| ||||    
T  11923856 cgaaaacctttttttgacaggtttgtagcttacaaattgtctgtttatcttttaggtttaacgtttgctaatccttgcttc 11923936  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 16261581 - 16261655
Alignment:
Q  12 aaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatcctta 86  Q
    ||||| ||||||||||| |||| ||| ||  | ||||| | |||||||||||| |||||||||||| ||||||||    
T  16261581 aaaactcttatttgatacgtttatcgattataacctgtttatttatcttttagatttagcgtttgctaatcctta 16261655  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 42646644 - 42646699
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcg 72  Q
    ||||||||||||||||||||||||| ||||||| ||    ||||||||||| ||||||||    
T  42646644 aaacccttatttgataggtttgtcgtttgcagcttg----tttatcttttatgtttagcg 42646699  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 45085734 - 45085779
Alignment:
Q  31 tttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttg 76  Q
    ||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  45085734 tttgtcgcttgcaacttgtctgtttatcttttaggtttagcttttg 45085779  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 13 - 100
Target Start/End: Original strand, 15081540 - 15081627
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgt 100  Q
    ||||| |||||||| |||||||||||||||| | ||| | ||||||| ||| ||||||||||||  ||||||| ||||||| ||||||    
T  15081540 aaacctttatttgacaggtttgtcgcttgcaacttgtgtgtttatctcttatgtttagcgtttgttaatccttgcttccgttctgcgt 15081627  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 12310828 - 12310895
Alignment:
Q  10 cgaaaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgc 77  Q
    ||||||||||| ||| ||||||||||||||  || | ||||| |||||||||||||||||||| ||||    
T  12310828 cgaaaaccctttttttataggtttgtcgctcacaacttgtctgtttatcttttaggtttagcgcttgc 12310895  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 38082206 - 38082155
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttag 64  Q
    |||||||||||||||| |||||||||||||| ||| ||| ||||||||||||    
T  38082206 aaacccttatttgatatgtttgtcgcttgcaacctctctgtttatcttttag 38082155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 9295310 - 9295392
Alignment:
Q  20 tatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttccgtactgcgtca 102  Q
    ||||||| || ||||||||||||| | ||||| ||||||| |||| ||||||| ||| |||||||| ||| ||| ||||||||    
T  9295310 tatttgacagatttgtcgcttgcaacttgtctgtttatctcttagatttagcgcttgtcaatccttgctttcgttctgcgtca 9295392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 10456316 - 10456238
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgccaatccttacttcc 91  Q
    |||||||| ||||| |||||||||||||||| | | ||| |||||||||||| ||||| | |||| ||||||| |||||    
T  10456316 aaacccttttttgacaggtttgtcgcttgcaacttatctatttatcttttagatttagagcttgctaatccttgcttcc 10456238  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 26563812 - 26563870
Alignment:
Q  120 cgatccgtcagagaagacaacataacaaactcaaaaacaagattatagaaactaactcc 178  Q
    |||||||||||| |||||| ||||||||||||||||||  || | ||||||||||||||    
T  26563812 cgatccgtcagataagacaccataacaaactcaaaaacttgagtctagaaactaactcc 26563870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 18180803 - 18180738
Alignment:
Q  13 aaacccttattt-gataggtttgtcgcttgcagcctgtctctttatcttttaggtttagcgtttgc 77  Q
    |||||||||||| ||||||||||||||||||| | ||||  |||||| ||||||||||||| ||||    
T  18180803 aaacccttattttgataggtttgtcgcttgcaacatgtcagtttatcctttaggtttagcgcttgc 18180738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 4360924 - 4360868
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggttta 69  Q
    ||||| |||||| |||||||||||||||||| ||||| | ||||||||||| |||||    
T  4360924 aaacctttatttaataggtttgtcgcttgcaacctgtgtatttatcttttaagttta 4360868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 8275 - 8218
Alignment:
Q  13 aaacccttatttgataggtttgtcgcttgcagcctgtctctttatcttttaggtttag 70  Q
    |||||||||||||| |||||||||||||||| | ||||| |||||||| |||||||||    
T  8275 aaacccttatttgacaggtttgtcgcttgcaacttgtctgtttatcttctaggtttag 8218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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