View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395_high_1 (Length: 787)
Name: NF3395_high_1
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 11585387 - 11585718
Alignment:
| Q |
18 |
agttgaaatatgtgtaatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
117 |
Q |
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| T |
11585387 |
agttgaaatatgtgtgatttattcatttatatacttttcagtgattactttaccagaaggaaagagatgtgtaatgaaacttgcacatcaggtgcttaag |
11585486 |
T |
|
| Q |
118 |
gagttcagtaaaaatttaacaatctcaagcaaatcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585487 |
gagttcagtaaaaatttaacaatgtcaagcaaatcagatttaccacaatacattgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
11585586 |
T |
|
| Q |
218 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585587 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
11585686 |
T |
|
| Q |
318 |
tgcaagacgttttgaggttcaaagaatcttcg |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11585687 |
tgcaagacgttttgaggttcaaagaatcttcg |
11585718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 11597563 - 11597894
Alignment:
| Q |
18 |
agttgaaatatgtgtaatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
117 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11597563 |
agttgaaatatgtgtgatttattcatttatatacttttcagtgattactttaccagaaggaaggagatgtgtaatgaaacttgcacatcaggtgcttaag |
11597662 |
T |
|
| Q |
118 |
gagttcagtaaaaatttaacaatctcaagcaaatcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaata |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
11597663 |
gagttcagtaaaaatttaacaatgtcaagcaaatcagatttaccacaatacattgctgataccgatgatagcggggttaggttttcgattccaaaaaata |
11597762 |
T |
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| Q |
218 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaagagatcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11597763 |
gaaacttatttctgtcaaatgatccattcattgttattgttgctagctccgtttccttacctctcccatctcatactgttttcgacttcttaagagatcc |
11597862 |
T |
|
| Q |
318 |
tgcaagacgttttgaggttcaaagaatcttcg |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11597863 |
tgcaagacgttttgaggttcaaagaatcttcg |
11597894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 425 - 786
Target Start/End: Original strand, 11585794 - 11586160
Alignment:
| Q |
425 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585794 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
11585893 |
T |
|
| Q |
525 |
tttaccatattttatttataaaagaatattttgannnnnnnnn--aatgttataaactatatcttaatttatatttatagccattttcctacacttccgt |
622 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585894 |
tttaccatattttatttataaaagaatattttgatttttttttttaatgttataaactatatcttaatttatatttatagccattttcctacacttccgt |
11585993 |
T |
|
| Q |
623 |
ccatgtcatttcaaat---gaacgtatgatgcacctcatttgtgtgaagattgtttcaattattttcaaatttggtgccaacttctcaatatttaggctt |
719 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11585994 |
ccatgtcatttcaaataatgaacatatgatgcacctcatttgtgtgaagattgtttcaattattttcaaatttggtgccaacttctcaatatttaggctt |
11586093 |
T |
|
| Q |
720 |
attagggcaaatgtatccccccttttgttcttgtacttctgtagttagcttgatgatgtccatctca |
786 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
11586094 |
attagggcaaatgtagcctcccttttgttcttgtacttctgtagttagcttgttgatttacatctca |
11586160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 568 - 776
Target Start/End: Original strand, 11598531 - 11598739
Alignment:
| Q |
568 |
aatgttataaactatatcttaatttatatttatagccattttcctacacttccgtccatgtcatttcaaatgaacgtatgatgcacctcatttgtgtgaa |
667 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11598531 |
aatgttataaactatatcttaatttatatttattgccattttcctacacttccgtccatgtcatttcaaatgaacatatgatgcacctcatttgtgtgaa |
11598630 |
T |
|
| Q |
668 |
gattgtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaatgtatccccccttttgttcttgtacttctgtagttag |
767 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
11598631 |
gattgtttcaattattttcaaatttggtgccaacttctcaatatttaggcttattagggcaaacgtagccccccttttgttcttgtacttctgtagttag |
11598730 |
T |
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| Q |
768 |
cttgatgat |
776 |
Q |
| |
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|||| |||| |
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| T |
11598731 |
cttgttgat |
11598739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 151 - 344
Target Start/End: Original strand, 11608770 - 11608965
Alignment:
| Q |
151 |
tcagatttaccattatactttgctgatactgatgatagcggggttaggttttcgattcgaaaaaatagaaacttatttctgtcaaatgatccattcattg |
250 |
Q |
| |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||| |
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| T |
11608770 |
tcagatttaccacaatacattgctgatactgatgatagcggggttaggttttcgattccaaaaaacaaaaacttatttctgtcaaatgatccattcattg |
11608869 |
T |
|
| Q |
251 |
ttattgttgctagctccgtttcgttacctctcccatctcatactgttttcgacttcttaaga--gatcctgcaagacgttttgaggttcaaagaat |
344 |
Q |
| |
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| T |
11608870 |
ttattgttgctagctccgtttcgatacctctcccatctcatattgttttcgacttcttaagatcgatcctgcaagacgttttgaggttcaaagaat |
11608965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 425 - 558
Target Start/End: Original strand, 11597970 - 11598103
Alignment:
| Q |
425 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
524 |
Q |
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| T |
11597970 |
cacgcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcatcccaaccactatgtatcaattattcaggta |
11598069 |
T |
|
| Q |
525 |
tttaccatattttatttataaaagaatattttga |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
11598070 |
tttaccatattttatttataaaagaatattttga |
11598103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 428 - 494
Target Start/End: Original strand, 11609046 - 11609112
Alignment:
| Q |
428 |
gcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11609046 |
gcagtgggataagttttgtgacggaaatccatggcatgaaattgcacacatctctactggaactcat |
11609112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 672 - 708
Target Start/End: Original strand, 11609182 - 11609218
Alignment:
| Q |
672 |
gtttcaattattttcaaatttggtgccaacttctcaa |
708 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| |
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|
| T |
11609182 |
gtttcaattattttcaaatttgatgccaacttctcaa |
11609218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 628 - 665
Target Start/End: Original strand, 11609109 - 11609146
Alignment:
| Q |
628 |
tcatttcaaatgaacgtatgatgcacctcatttgtgtg |
665 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
11609109 |
tcatttcaaatgaagatatgatgcacctcatttgtgtg |
11609146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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