View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3395_low_2 (Length: 439)
Name: NF3395_low_2
Description: NF3395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3395_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 148 - 422
Target Start/End: Original strand, 43978136 - 43978416
Alignment:
| Q |
148 |
aaattagattatccctgc------ttgcaaactctaactcaaactcatttaaagaattgatctctctccacatataagtcaagattgaagcattcaaata |
241 |
Q |
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| T |
43978136 |
aaattagattatccctgcatgcagttgcaaactctaactcaaactcatttaaagaattgatctctctccacatataagtcaagattgaagcattcaaata |
43978235 |
T |
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| Q |
242 |
tttatcactcatgtcacactagattgatcattctctttagatcaaaatgaccaaataaaaatattgagaaagaatgcggtgttatgttaagtagcaccaa |
341 |
Q |
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| T |
43978236 |
tttatcactcatgtcacactaggttgatcattctctttagatcaaaatgaccaaataaaaatattgagaaagaatgcggtgttatgttaagtagcaccaa |
43978335 |
T |
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| Q |
342 |
tatcaaatttaaagcatgtttgatgtttgacattgggcacaatggtgttgacgttaatataacaccaacacatatagttac |
422 |
Q |
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| T |
43978336 |
tatcaaatttaaagcatgtttgatgtttgacattgggcacaatggtgttgacgttaacacaacaccaacacatatagttac |
43978416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 7 - 163
Target Start/End: Original strand, 43977848 - 43978004
Alignment:
| Q |
7 |
gtgagatgaataaacaaaaagaaatgacatttcctgcaaataaaataacattccatatattagcaaaaataaaattgtatggtgatattctaaagcgtgt |
106 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43977848 |
gtgacatgaataaacaaaaagaaatggcatttcctgcaaataaaataacattccatatattagcaaaaataaaattgtatggtgatattctaaagcgtgt |
43977947 |
T |
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| Q |
107 |
taaattaattctttcannnnnnnccctacaatcttgatgtcaaattagattatccct |
163 |
Q |
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| T |
43977948 |
taaattaattctttcatttttttccctacaatcttgatgtcaaattagattatccct |
43978004 |
T |
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