View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3396_low_1 (Length: 761)

Name: NF3396_low_1
Description: NF3396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3396_low_1
NF3396_low_1
[»] chr4 (7 HSPs)
chr4 (506-742)||(32649321-32649556)
chr4 (395-506)||(32649169-32649281)
chr4 (348-417)||(32649095-32649164)
chr4 (306-350)||(32225581-32225625)
chr4 (308-347)||(23976706-23976745)
chr4 (307-345)||(44376078-44376116)
chr4 (307-348)||(17558824-17558865)
[»] chr2 (4 HSPs)
chr2 (308-477)||(22136279-22136449)
chr2 (70-222)||(32073698-32073855)
chr2 (252-308)||(32073854-32073910)
chr2 (1-52)||(32073658-32073709)
[»] chr5 (7 HSPs)
chr5 (306-362)||(16349713-16349769)
chr5 (308-362)||(4082574-4082628)
chr5 (307-345)||(30096275-30096313)
chr5 (308-366)||(16222687-16222745)
chr5 (308-350)||(40951482-40951524)
chr5 (308-345)||(25099236-25099273)
chr5 (308-345)||(25158326-25158363)
[»] chr8 (4 HSPs)
chr8 (306-360)||(16367864-16367918)
chr8 (308-360)||(42308123-42308175)
chr8 (307-345)||(405353-405391)
chr8 (306-352)||(771642-771688)
[»] chr1 (4 HSPs)
chr1 (305-345)||(28947451-28947491)
chr1 (302-360)||(27840301-27840359)
chr1 (308-350)||(51387129-51387171)
chr1 (303-360)||(47250304-47250361)
[»] chr7 (1 HSPs)
chr7 (306-345)||(31097904-31097943)
[»] scaffold0896 (1 HSPs)
scaffold0896 (308-345)||(1109-1146)
[»] chr6 (2 HSPs)
chr6 (308-345)||(8657064-8657101)
chr6 (308-345)||(33289070-33289107)
[»] chr3 (1 HSPs)
chr3 (308-353)||(53693213-53693258)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 506 - 742
Target Start/End: Original strand, 32649321 - 32649556
Alignment:
Q  506 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacaatgatattaaccatcaggaattgcataagga 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  32649321 aacacattaaatttaaccaccatgaacaacatgcatcctcaactttataatcggaatggcctgcatacatagatattaaccatcaggaattgcataagga 32649420  T
Q  606 taacgattggcaggctatcaaactaattagttataatagaaagttctactccttgttctttattgcttcatctccttgccattttaagtagagttgagac 705  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32649421 taacaattggcaggctatcaaactaattagttatagtagaaagttctactccttgttctttattgcttcatctcc-tgccattttaagtagagttgagac 32649519  T
Q  706 attttatgcatgacaaaatgctagagaagtgttaatg 742  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32649520 attttatgcatgacaaaatgctagagaattgttaatg 32649556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 32649169 - 32649281
Alignment:
Q  395 cagagaatatgtctgttgttacagacttatgtgtggtctcgtgatatacg-atgtaacgtagtgtgttttgttgtttcactaaacttatgtgacagtata 493  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  32649169 cagagaatatgtctgttgttacaaacttatgtgtggtctcgtgatatacgaatgtagcgttgtgtgttttgttgtgtcactaaacttatgtgacagtata 32649268  T
Q  494 tttagtcattaga 506  Q
     ||||||||||||    
T  32649269 cttagtcattaga 32649281  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 32649095 - 32649164
Alignment:
Q  348 gtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtctgttgttaca 417  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||    
T  32649095 gtttaagacattacttgaaatatattgtagtatgaatgaacttttcgcagaaaatatgtctgttgttaca 32649164  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 32225581 - 32225625
Alignment:
Q  306 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtt 350  Q
    ||||||||||||||||| |||||||||||||  ||||||||||||    
T  32225581 aaactagatcgtccaccggtgctgccgcacgggtcatatatagtt 32225625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 23976706 - 23976745
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatata 347  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  23976706 actagatcgtccacccgtgctgccgcacgggtcatatata 23976745  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 44376078 - 44376116
Alignment:
Q  307 aactagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  44376078 aactagatcgtccacccgtgctgccgcacgggtcatata 44376116  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 17558824 - 17558865
Alignment:
Q  307 aactagatcgtccacccgtgctgccgcacgtatcatatatag 348  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  17558824 aactagatcgtctacccgtgctgccgcacgggtcatatatag 17558865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 308 - 477
Target Start/End: Original strand, 22136279 - 22136449
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaaatatattttagtatgaatgaacttttcacagagaatatgtc 407  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||| | |||||||||| ||||||||   ||||| || |||||||||||||    
T  22136279 actagatcgtccacccgtgttgccgcacgggtcatatatagtttaagacattactcgaaatatattgtagtatga---aacttgtcgcagagaatatgtc 22136375  T
Q  408 tgttgttacagacttatgtgtggtctcgtgatatac----gatgtaacgtagtgtgttttgttgtttcactaaa 477  Q
    |||||||||| |||||||||||||||||||||||||     |||||||||||||||||||| |||| |||||||    
T  22136376 tgttgttacaaacttatgtgtggtctcgtgatatactacaaatgtaacgtagtgtgttttgctgttccactaaa 22136449  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 70 - 222
Target Start/End: Original strand, 32073698 - 32073855
Alignment:
Q  70 caaggagaataattagttttttattttcgattcacttctctttcaatgtttggtaacttagtccacttcctacgacttcctactttgatttcaagatatt 169  Q
    |||||||||||||||||||||| ||  |||||||||||||||| | ||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||    
T  32073698 caaggagaataattagtttttt-ttcccgattcacttctcttttagtgtttggtaacttagtccacttcatacaaattcctactt-gatttcaagatatt 32073795  T
Q  170 tgaacaatatagccagtcccataa-------ttaggtagctataagcattctctagttac 222  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  32073796 tgaacaatatagccagtcccataaatcatacttaggtagctataagcattctctagttac 32073855  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 32073854 - 32073910
Alignment:
Q  252 acttttgataggtatgaaagagtgtcaaactattgtcgctagtctgcaataaataaa 308  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||||||||||||    
T  32073854 acttttgataggtatgaaagagcgacaaactattgtcactagtctgcaataaataaa 32073910  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 32073658 - 32073709
Alignment:
Q  1 ttttgttgcatgagagaaattaaagttaataaaatcaagacaaggagaataa 52  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  32073658 ttttgttgcataagagaaattaaagttaataaaatcaaggcaaggagaataa 32073709  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 16349713 - 16349769
Alignment:
Q  306 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 362  Q
    |||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  16349713 aaactagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 16349769  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 4082628 - 4082574
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatt 362  Q
    |||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  4082628 actagatcgtccacccgtgctgccgcacgggtcatatatagttaaaaacattatt 4082574  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 30096275 - 30096313
Alignment:
Q  307 aactagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  30096275 aactagatcgtccacccgtgctgccgcacggatcatata 30096313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 366
Target Start/End: Complemental strand, 16222745 - 16222687
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacattatttgaa 366  Q
    ||||||||||| |||||||||||||||| | |||||||||| | || |||||| |||||    
T  16222745 actagatcgtctacccgtgctgccgcacatgtcatatatagctaaaaacattagttgaa 16222687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 40951524 - 40951482
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 350  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  40951524 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 40951482  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 25099236 - 25099273
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25099236 actagatcgtccacccgtgctgccgcacgggtcatata 25099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 25158326 - 25158363
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||  |||||||    
T  25158326 actagatcgtccacccgtgctgccgcacgggtcatata 25158363  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 16367918 - 16367864
Alignment:
Q  306 aaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 360  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||| ||||||    
T  16367918 aaactagatcgtctacccgtgctgccgcacgggtcatatatagtttaaaacatta 16367864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 42308123 - 42308175
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 360  Q
    ||||||||||||||| |||||||||||||  |||||||||||| || ||||||    
T  42308123 actagatcgtccacctgtgctgccgcacgggtcatatatagttaaaaacatta 42308175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 405353 - 405391
Alignment:
Q  307 aactagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  405353 aactagatcgtccacccgtgctgccgcacgggtcatata 405391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 771688 - 771642
Alignment:
Q  306 aaactagatcgtccacccgtgctgccgcacgtatcatatatagttta 352  Q
    ||||||| ||||| |||||||||||||||||  ||||||||||||||    
T  771688 aaactaggtcgtctacccgtgctgccgcacgggtcatatatagttta 771642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 28947451 - 28947491
Alignment:
Q  305 taaactagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  28947451 taaactagatcgtccacccgtgctgccgcacgggtcatata 28947491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 27840301 - 27840359
Alignment:
Q  302 aaataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 360  Q
    |||| |||||||||||| |||||||||| ||||||  |||| |||||||||| ||||||    
T  27840301 aaatgaactagatcgtctacccgtgctgtcgcacgggtcatttatagtttaaaacatta 27840359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 51387129 - 51387171
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtt 350  Q
    ||||||||||| |||||||||||||||||  ||||||||||||    
T  51387129 actagatcgtctacccgtgctgccgcacgggtcatatatagtt 51387171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 47250361 - 47250304
Alignment:
Q  303 aataaactagatcgtccacccgtgctgccgcacgtatcatatatagtttaagacatta 360  Q
    |||| ||||||||||||| ||| |||||||||||  |||||||||||| || ||||||    
T  47250361 aatatactagatcgtccatccgagctgccgcacgggtcatatatagttaaaaacatta 47250304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 31097943 - 31097904
Alignment:
Q  306 aaactagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  31097943 aaactagatcgtccacccgtgctgccgcacgggtcatata 31097904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 1146 - 1109
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||  |||||||    
T  1146 actagatcgtccacccgtgctgccgcacgggtcatata 1109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 8657064 - 8657101
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||  |||||||    
T  8657064 actagatcgtccacccgtgctgccgcacgggtcatata 8657101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 345
Target Start/End: Original strand, 33289070 - 33289107
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatata 345  Q
    |||||||||||||||||||||||||||||  |||||||    
T  33289070 actagatcgtccacccgtgctgccgcacgggtcatata 33289107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 53693258 - 53693213
Alignment:
Q  308 actagatcgtccacccgtgctgccgcacgtatcatatatagtttaa 353  Q
    ||||||||||| ||||||||||||||||   |||||||||||||||    
T  53693258 actagatcgtctacccgtgctgccgcacaggtcatatatagtttaa 53693213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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