View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3396_low_3 (Length: 301)
Name: NF3396_low_3
Description: NF3396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3396_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 115 - 287
Target Start/End: Original strand, 32393745 - 32393916
Alignment:
| Q |
115 |
taactattaactatctggctatgcgggcccc-tgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattag |
213 |
Q |
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| T |
32393745 |
taactatcaactatctggctatgcgggccccctgagagccatgatgacatgctatgatggcacattaattttgtgaaattatttgggtgaataaaattac |
32393844 |
T |
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| Q |
214 |
atatatcagagagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
287 |
Q |
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| T |
32393845 |
atatatc--agagtgtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctgtg |
32393916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 32393361 - 32393455
Alignment:
| Q |
18 |
attacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcat |
113 |
Q |
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| T |
32393361 |
attacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgacc-aattaattgttggcaagaaatatgcttattcat |
32393455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 26162584 - 26162783
Alignment:
| Q |
18 |
attacttgtatcaactcttggtgggtgatgtgtagcactaaatagcaatcttcaagctgaccaaattaattgttggcaagaaatatgcttattcatctaa |
117 |
Q |
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| T |
26162584 |
attacttgtactagctcttggtgggtgatgtgtaacactaaatagcaatcttcaagatgaccaa-ttaattgttggcaggaaatatgtttatccatctaa |
26162682 |
T |
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| Q |
118 |
ctattaactatctggctatgcgggcccctgagagccatgatgac-atgctatgatggcac-attaattttgtgaaattatttgggtgaataaaattagat |
215 |
Q |
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| T |
26162683 |
ctatcaacaatctggctatgtgggatcctgagagccatgatgacaatgc-ctgatggcacaattaattttgtgaaatgatttgggtgaataaaattacat |
26162781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 26163085 - 26163142
Alignment:
| Q |
228 |
gtcctttcttccactcttttccaaacttgacaaattggaatgtggtaagcatggtctg |
285 |
Q |
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| T |
26163085 |
gtcctttcttccactctttttcaaacttgacaaattggagtgtggtaagcatggtctg |
26163142 |
T |
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