View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3397_high_1 (Length: 358)

Name: NF3397_high_1
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3397_high_1
NF3397_high_1
[»] chr5 (6 HSPs)
chr5 (9-340)||(34256958-34257289)
chr5 (29-177)||(34257310-34257462)
chr5 (94-162)||(41553633-41553701)
chr5 (173-286)||(34256787-34256897)
chr5 (31-84)||(41553559-41553613)
chr5 (173-331)||(41553371-41553526)
[»] chr1 (1 HSPs)
chr1 (92-162)||(37558239-37558310)


Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 34256958 - 34257289
Alignment:
Q  9 acaatgagaaacgggtatagtaaatgaatttgacataataatatcgattaaaagtcgaaagtttatatttttgcaacaaatgatgtttgaaatttgccat 108  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  34256958 acaatgagaaacgggtatagtaaatgaatttgagataataatatcgattaaaagtcgaaagtttatctttttgcaacaaatgatgtttgaaattcgccat 34257057  T
Q  109 ttctaattacttttcatgtagccatatgaagaggcaagcatgaagataaaggaagaagttaaagaagcacccacaaataacaaagaaaagaagaaacatc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34257058 ttctaattacttttcatgtagccatatgaagaggcaagcatgaagataaaggaagaagttaaagaagcacccacaaataacaaagaaaagaagaaacatc 34257157  T
Q  209 gaggtgttccaaggggacagaagagtgcatatcaaatattcctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34257158 gaggtgttccaaggggacagaagagtgcatatcaaatattcctcaagcatgaatgcgctagactgaaagctgatcatcagtttcaaggtgacagaaaact 34257257  T
Q  309 caaggctattgatgcttggaagatgatgtccc 340  Q
    ||||||||||||||||||||||||||||||||    
T  34257258 caaggctattgatgcttggaagatgatgtccc 34257289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 34257310 - 34257462
Alignment:
Q  29 taaatgaatttgacataataatatcgattaaaag---tcgaaag-tttatatttttgcaacaaatgatgtttgaaatttgccatttctaattacttttca 124  Q
    |||||||| |||||||||||||||||| || |||   | ||||| ||||||||||||| | |||||||||||||||||||||| |||||||||| |||||    
T  34257310 taaatgaaattgacataataatatcgaatagaagaagttgaaagatttatatttttgccataaatgatgtttgaaatttgccacttctaattacatttca 34257409  T
Q  125 tgtagccatatgaagaggcaagcatgaagataaaggaagaagttaaagaagca 177  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||| ||||    
T  34257410 tgtagccatatgaagaggaaagcatgaagataaaggaagaaattaaagcagca 34257462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 41553633 - 41553701
Alignment:
Q  94 tttgaaatttgccatttctaattacttttcatgtagccatatgaagaggcaagcatgaagataaaggaa 162  Q
    |||||||||||| | |||||||| |||||||| |||||||||| ||||| ||||| ||| |||||||||    
T  41553633 tttgaaatttgcaacttctaattgcttttcatttagccatatgtagaggaaagcaagaaaataaaggaa 41553701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 34256787 - 34256897
Alignment:
Q  173 aagcacccacaaataacaaagaaaagaagaaacatcgaggtgttccaaggggacagaagagtgcatatcaaatattcctcaagcatgaatgcgctagact 272  Q
    |||||||| |||| |||||||||||||||||||   |||||| |||||  ||||   |||||| |||| | |||||||||||||| ||||| ||| ||||    
T  34256787 aagcaccctcaaagaacaaagaaaagaagaaacggagaggtgctccaataggac---agagtggatataatatattcctcaagcaggaatgtgctcgact 34256883  T
Q  273 gaaagctgatcatc 286  Q
     |||||| ||||||    
T  34256884 taaagctaatcatc 34256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 41553559 - 41553613
Alignment:
Q  31 aatgaatttgacataataatatcgattaaaagtcgaaag-tttatatttttgcaa 84  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||| ||||||||    
T  41553559 aatgaaattgacataataatatctattaaaagtcgaaagatttatagttttgcaa 41553613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 331
Target Start/End: Original strand, 41553371 - 41553526
Alignment:
Q  173 aagcacccacaaataacaaagaaaagaagaaacatcgaggtgttccaaggggacagaagagtgcatatcaaatattcctcaagcatgaatgcgctagact 272  Q
    |||||||| ||| |||||||||||||||||||||   ||||| |||||||   || |   |||  || ||||||||||||||| | ||||| ||| ||||    
T  41553371 aagcaccctcaagtaacaaagaaaagaagaaacagaaaggtgctccaaggaaccaaa---gtggttaccaaatattcctcaagaaggaatgtgctcgact 41553467  T
Q  273 gaaagctgatcatcagtttcaaggtgacagaaaactcaaggctattgatgcttggaaga 331  Q
    |||||||||||||| |      |||| ||||||||  | ||||||||||||||||||||    
T  41553468 gaaagctgatcatcgggacattggtgtcagaaaacaaatggctattgatgcttggaaga 41553526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 37558239 - 37558310
Alignment:
Q  92 tgtttgaaatttgccatttctaattacttttc-atgtagccatatgaagaggcaagcatgaagataaaggaa 162  Q
    ||||||||| || ||||||||||||||||||  |||||||||||||  |||| ||||| |||||||||||||    
T  37558239 tgtttgaaacttaccatttctaattacttttttatgtagccatatgtggaggaaagcaggaagataaaggaa 37558310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University