View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3397_high_2 (Length: 356)

Name: NF3397_high_2
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3397_high_2
NF3397_high_2
[»] chr7 (4 HSPs)
chr7 (1-317)||(48078919-48079243)
chr7 (134-282)||(3094568-3094715)
chr7 (213-282)||(44798043-44798112)
chr7 (186-255)||(48138673-48138742)
[»] scaffold0374 (1 HSPs)
scaffold0374 (82-203)||(13802-13923)
[»] chr4 (6 HSPs)
chr4 (104-264)||(55579626-55579786)
chr4 (108-179)||(41488164-41488236)
chr4 (76-147)||(8069233-8069304)
chr4 (213-287)||(43770414-43770488)
chr4 (96-145)||(23940982-23941031)
chr4 (82-138)||(45662016-45662072)
[»] chr8 (7 HSPs)
chr8 (213-282)||(9136577-9136646)
chr8 (213-282)||(2813619-2813688)
chr8 (81-138)||(16591140-16591197)
chr8 (77-151)||(31431038-31431112)
chr8 (220-290)||(31431241-31431311)
chr8 (213-282)||(14180274-14180343)
chr8 (186-282)||(37231983-37232079)
[»] chr5 (3 HSPs)
chr5 (213-290)||(21960686-21960762)
chr5 (77-138)||(8229504-8229565)
chr5 (82-151)||(27925814-27925883)
[»] chr1 (8 HSPs)
chr1 (213-282)||(31183654-31183723)
chr1 (213-261)||(50709694-50709742)
chr1 (82-151)||(35160436-35160505)
chr1 (215-255)||(42603411-42603451)
chr1 (213-283)||(34084735-34084805)
chr1 (213-282)||(29488451-29488520)
chr1 (77-138)||(41828022-41828082)
chr1 (82-135)||(50709801-50709854)
[»] chr3 (5 HSPs)
chr3 (81-153)||(31518950-31519021)
chr3 (220-261)||(43471940-43471981)
chr3 (213-282)||(31489368-31489437)
chr3 (213-261)||(1341566-1341614)
chr3 (186-282)||(47014555-47014651)
[»] chr2 (2 HSPs)
chr2 (82-135)||(36925870-36925923)
chr2 (213-261)||(26352820-26352868)
[»] chr6 (1 HSPs)
chr6 (213-261)||(17533329-17533377)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 48078919 - 48079243
Alignment:
Q  1 ttgctatgaagtccagatacacagtatgagtatgatatgatacatata--------gaatttttnnnnnnntttaggactcagcacgattaagatacgtt 92  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||       |||||||||||  ||||||||||| ||||    
T  48078919 ttgctatgaagtccagatacacagtatgagtacgatatgatacatatatacatatagaatttttaaaaaaatttaggactcaatacgattaagattcgtt 48079018  T
Q  93 aataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcattcacactctttattaaatataattataaagactagaatttac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48079019 aataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcattcacactctttattaaatataattataaagactagaatttac 48079118  T
Q  193 aaaagataatagttgagagtaaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcatcatag 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48079119 aaaagataatagttgagagtaaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcatcatag 48079218  T
Q  293 aactcaataaattttgtctaatgta 317  Q
    |||||||||||||||||||||||||    
T  48079219 aactcaataaattttgtctaatgta 48079243  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 282
Target Start/End: Complemental strand, 3094715 - 3094568
Alignment:
Q  134 ttgaaagaaatatgcattcacactctttattaaatataattataaagactagaatttacaaaagataatagttgagagtaaaatagaaaatgtatagttt 233  Q
    ||||||||||| |||||||| | | || |||||||||| ||||||| |    ||||||||||| | || ||||| ||  |||||||||| |||||| ||     
T  3094715 ttgaaagaaatgtgcattcatatttttcattaaatatacttataaatatcgcaatttacaaaaaacaagagttgtgatcaaaatagaaa-tgtataatta 3094617  T
Q  234 tcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    ||||||||||  ||||| ||||||||||||| || |||||| |||||||    
T  3094616 tcatataaattgtattcaatttccattcttatgttatgataccaacaaa 3094568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 44798043 - 44798112
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| ||| |||| ||||||| ||||||||||||| ||||| ||||| || || | ||||||||||||    
T  44798043 aaaataaaaattgtaaagttttcgtataaatcatattatattttcattcatatgttaggatatcaacaaa 44798112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 48138742 - 48138673
Alignment:
Q  186 aatttacaaaagataatagttgagagtaaaatagaaaatgtatagttttcatataaatcatattctattt 255  Q
    ||||||||||| ||||||  || ||  |||||| |||||||| ||||||| ||||||||||||| |||||    
T  48138742 aatttacaaaaaataatatatgtgatcaaaataaaaaatgtaaagttttcgtataaatcatattatattt 48138673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0374 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0374
Description:

Target: scaffold0374; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 203
Target Start/End: Original strand, 13802 - 13923
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcattcacactctttattaaatataattataaaga 181  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||||| ||||| ||| | ||||||||| | ||| ||||||| |||||||||||||||    
T  13802 taagatacgttatcaaaatctttaaaataaaattaatttgcatgtaaaatacttaaaaaacatatgcattgatactttttattagatataattataaaga 13901  T
Q  182 ctagaatttacaaaagataata 203  Q
      | ||||||||||| ||||||    
T  13902 tcacaatttacaaaaaataata 13923  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 55579626 - 55579786
Alignment:
Q  104 tataataaaactaatttgcatgtaaattacttgaaagaaatatgcattcacactctttattaaatataattataaagactagaatttacaaaagataata 203  Q
    ||||||||| ||||||| |||||||| |||||| ||| |||||||||  | |  ||| |||||||| | |||||||||  | ||||||| ||| ||| ||    
T  55579626 tataataaatctaatttacatgtaaaatacttgtaaggaatatgcatcgataaccttcattaaatacacttataaagatcacaatttacgaaaaatacta 55579725  T
Q  204 gttgagagtaaaatagaaaatgtatagttttcatataaatcatattctatttccattctta 264  Q
     |||  |  |||||||||||||||||||| || |||||||| |||||||||| ||||||||    
T  55579726 cttgtaatcaaaatagaaaatgtatagttatcttataaatcctattctattttcattctta 55579786  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 41488164 - 41488236
Alignment:
Q  108 ataaaactaatttgcatgtaaattactt-gaaagaaatatgcattcacactctttattaaatataattataaa 179  Q
    ||||||||||||||||||| |  ||||| ||||||||| | |||| |||||||| ||||||||||||||||||    
T  41488164 ataaaactaatttgcatgtgacatactttgaaagaaatgttcattgacactcttcattaaatataattataaa 41488236  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 8069304 - 8069233
Alignment:
Q  76 cacgattaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatg 147  Q
    ||||| ||||||||||||| ||||| || ||||||||||| || | |||||||| || || |||||||||||    
T  8069304 cacgactaagatacgttaacaaaattttgataataaaacttatatacatgtaaaataatttaaagaaatatg 8069233  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 43770414 - 43770488
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcat 287  Q
    |||||| |||||||| ||||||| ||||||||||||||||||    ||| ||||| | |||||||||||| ||||    
T  43770414 aaaataaaaaatgtaaagttttcgtataaatcatattctattatatttcatacgttaggatatcaacaaattcat 43770488  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 23940982 - 23941031
Alignment:
Q  96 aaaatctttataataaaactaatttgcatgtaaattacttgaaagaaata 145  Q
    ||||| ||||||||||| || || |||||||||| |||||||||||||||    
T  23940982 aaaatatttataataaatcttatatgcatgtaaaatacttgaaagaaata 23941031  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 45662072 - 45662016
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaa 138  Q
    ||||||||||||| ||||| |||||| ||||||| || |||||||||| || |||||    
T  45662072 taagatacgttaacaaaatttttatactaaaacttatatgcatgtaaaatatttgaa 45662016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 9136577 - 9136646
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| |||||||| | ||||| ||||||||||||||||||| ||||| || || ||||||||||||||    
T  9136577 aaaataaaaaatgtaaaattttcgtataaatcatattctattttcattcatatgttatgatatcaacaaa 9136646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 2813619 - 2813688
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| |||||||| ||||||  ||||||||||||||||||| ||||| || || | ||||||||||||    
T  2813619 aaaataaaaaatgtaaagtttttgtataaatcatattctattttcattcatatgttaggatatcaacaaa 2813688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 16591140 - 16591197
Alignment:
Q  81 ttaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaa 138  Q
    |||||||||||||| ||||  |||||||||||||| || |||||||||| ||||||||    
T  16591140 ttaagatacgttaacaaaaattttataataaaacttatatgcatgtaaaatacttgaa 16591197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 31431038 - 31431112
Alignment:
Q  77 acgattaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcatt 151  Q
    |||| ||| ||||||||||||||| | |||| ||||||| || |||||||||| ||||||||  ||||| |||||    
T  31431038 acgactaaaatacgttaataaaatttgtatactaaaacttatatgcatgtaaaatacttgaagaaaataagcatt 31431112  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 31431241 - 31431311
Alignment:
Q  220 aaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcatcat 290  Q
    |||||||| ||||||||||||||||||||| ||||| ||||| || || | |||||| ||| || ||||||    
T  31431241 aaaatgtaaagttttcatataaatcatattatattttcattcatatgttaagatatccacagaaacatcat 31431311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 14180343 - 14180274
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| || ||||| | ||||| ||||||||||||||||||| ||||| || || | ||||||||||||    
T  14180343 aaaataaaatatgtaaatttttcgtataaatcatattctattttcattcataagttaggatatcaacaaa 14180274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 37232079 - 37231983
Alignment:
Q  186 aatttacaaaagataatagttgagagtaaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    ||||||||||| ||||||  || ||  ||| || |||||||| | ||||| ||||||||||||||||||| ||||  || || | ||||||||||||    
T  37232079 aatttacaaaaaataatatatgtgatcaaagtaaaaaatgtaaatttttcgtataaatcatattctattttcatttatatgttaggatatcaacaaa 37231983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 21960686 - 21960762
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaatcatcat 290  Q
    |||||| |||||||||||||||| |||||||||||||||||||  ||| ||| | |  ||||||||||||||||||||    
T  21960686 aaaataaaaaatgtatagttttcgtataaatcatattctatttttattgtta-ggctagatatcaacaaaatcatcat 21960762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 8229565 - 8229504
Alignment:
Q  77 acgattaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaa 138  Q
    |||| ||||||||||||||||||  |||||| ||||||| || || ||||||| ||||||||    
T  8229565 acgactaagatacgttaataaaaaatttatattaaaacttatatgtatgtaaaatacttgaa 8229504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 27925883 - 27925814
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcatt 151  Q
    ||||||||||||| ||| | |||| ||||||||| || || ||||||| ||||||||| ||||| |||||    
T  27925883 taagatacgttaacaaattttttacaataaaacttatatgtatgtaaaatacttgaaaaaaataagcatt 27925814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 31183723 - 31183654
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| |||||||| ||||||||||||||||||||||||||| | ||| || || | ||||||||||||    
T  31183723 aaaataaaaaatgtaaagttttcatataaatcatattctattttctttcatatgttaggatatcaacaaa 31183654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 50709742 - 50709694
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattc 261  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  50709742 aaaataaaaaatgtaaagttttcatataaatcatattctattttcattc 50709694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 35160505 - 35160436
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcatt 151  Q
    |||||||||| || ||||  |||||||||||||| ||   |||||||| |||||||||||||||||||||    
T  35160505 taagatacgtaaacaaaaaatttataataaaacttataaacatgtaaaatacttgaaagaaatatgcatt 35160436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 42603411 - 42603451
Alignment:
Q  215 aatagaaaatgtatagttttcatataaatcatattctattt 255  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  42603411 aatagaaaatgtatagtttttgtataaatcatattctattt 42603451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 34084805 - 34084735
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaaa 283  Q
    |||||||||||||||||||||| | |||||| ||||| ||||| | ||| ||||| |  ||||||||||||    
T  34084805 aaaatagaaaatgtatagttttaaaataaattatattatattttctttcctacgttagaatatcaacaaaa 34084735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Complemental strand, 29488520 - 29488451
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| ||||| || ||||||| ||||||||||||| ||||| ||||| || || | ||||||||||||    
T  29488520 aaaataaaaaatataaagttttcgtataaatcatattttattttcattcatatgttaagatatcaacaaa 29488451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 138
Target Start/End: Complemental strand, 41828082 - 41828022
Alignment:
Q  77 acgattaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaa 138  Q
    |||||||||||| ||||||||||  |||||||||||||| || || ||||||| ||||||||    
T  41828082 acgattaagataagttaataaaaa-tttataataaaacttatatgtatgtaaaatacttgaa 41828022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 50709854 - 50709801
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattactt 135  Q
    ||||||||||||||||||| |||||| ||||| | || |||||||||| |||||    
T  50709854 taagatacgttaataaaatatttatactaaaatttatatgcatgtaaaatactt 50709801  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 31519021 - 31518950
Alignment:
Q  81 ttaagatacgttaataaaatctttataataaaactaatttgcatgtaaattacttgaaagaaatatgcattca 153  Q
    ||||||||| |||||||||  || ||||||||||| |  |||||||||| |||||||||||||||||||||||    
T  31519021 ttaagatacattaataaaaaatt-ataataaaacttaaatgcatgtaaaatacttgaaagaaatatgcattca 31518950  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 43471981 - 43471940
Alignment:
Q  220 aaaatgtatagttttcatataaatcatattctatttccattc 261  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  43471981 aaaatgtaaagttttcatataaatcatattctattttcattc 43471940  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 31489368 - 31489437
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    |||||| |||||||| ||||||| ||||||||||||| ||||| ||||| || || | ||||||| ||||    
T  31489368 aaaataaaaaatgtaaagttttcgtataaatcatattttattttcattcatatgttaagatatcagcaaa 31489437  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 1341566 - 1341614
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattc 261  Q
    |||||| |||||||| |||||||||||||| |||||| ||||| |||||    
T  1341566 aaaataaaaaatgtaaagttttcatataaaacatattttattttcattc 1341614  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 282
Target Start/End: Complemental strand, 47014651 - 47014555
Alignment:
Q  186 aatttacaaaagataatagttgagagtaaaatagaaaatgtatagttttcatataaatcatattctatttccattcttacgtcatgatatcaacaaa 282  Q
    ||||||||||| ||||||  || ||  |||||| |||||||| || ||||  ||||||||||||| |||| ||||| || || | ||||||||||||    
T  47014651 aatttacaaaaaataatacatgcgatcaaaataaaaaatgtaaagatttcgcataaatcatattcgattttcattcatatgttaggatatcaacaaa 47014555  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 36925923 - 36925870
Alignment:
Q  82 taagatacgttaataaaatctttataataaaactaatttgcatgtaaattactt 135  Q
    ||||||||||||||||||| |||||| ||||| | || |||||||||| |||||    
T  36925923 taagatacgttaataaaatatttatactaaaatttatatgcatgtaaaatactt 36925870  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 26352868 - 26352820
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattc 261  Q
    |||||| |||||||| ||||||| ||||||||||||| ||||| |||||    
T  26352868 aaaataaaaaatgtaaagttttcgtataaatcatattttattttcattc 26352820  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 17533329 - 17533377
Alignment:
Q  213 aaaatagaaaatgtatagttttcatataaatcatattctatttccattc 261  Q
    |||||| ||||| || ||||||| ||||||||||||||||||| |||||    
T  17533329 aaaataaaaaatataaagttttcgtataaatcatattctattttcattc 17533377  T

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