View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3397_high_4 (Length: 267)
Name: NF3397_high_4
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3397_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 4654750 - 4655003
Alignment:
| Q |
1 |
actcaattctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcannnnnnnnnacaatattggagtgacatatttatttattt |
100 |
Q |
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| T |
4654750 |
actcatttctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttcatttttttttacaatattggagtgacatatttatttattt |
4654849 |
T |
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| Q |
101 |
cacagttcacacatatttnnnnnnnnctatgactaaaaagaaaaattataattttatcaaactaaacannnnnnnnnnnnaagtaacgtaagtggctgaa |
200 |
Q |
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| T |
4654850 |
cacagttcacacatatttagaaaaa-ctatgactaaaa-gaaaaattataattttatcaaactaaacatttttttttgt-aagtaacatg-gtggctgaa |
4654945 |
T |
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| Q |
201 |
gttcacatattttaaatgttgatgtacaggttcaaactcaagcccttacatatatatat |
259 |
Q |
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| T |
4654946 |
gttcacat-ttttaaatgttgatgtacaggttcaaactcaagcccttacatatatatat |
4655003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4674541 - 4674601
Alignment:
| Q |
1 |
actcaattctttttatcaattgaaaaccataggaaggaaataataatactaatgcacttca |
61 |
Q |
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| T |
4674541 |
actcatttctttttactaactgaaaatcatacgaaggaaataaaaatactaatgcacttca |
4674601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 15028957 - 15028985
Alignment:
| Q |
191 |
agtggctgaagttcacatattttaaatgt |
219 |
Q |
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| T |
15028957 |
agtggctgaagttcacatattttaaatgt |
15028985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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