View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3397_low_2 (Length: 441)
Name: NF3397_low_2
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3397_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 117 - 398
Target Start/End: Original strand, 8525319 - 8525588
Alignment:
| Q |
117 |
ccacaccattatgaataaatgattttgtagaaagtgttaccaaatagtttatgtgaatgaaaatcaatttaaaaagtaagtgttgatgaaattttaagga |
216 |
Q |
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| T |
8525319 |
ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaaaac------------taagtgtggatgatattttaagga |
8525406 |
T |
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| Q |
217 |
acgcaacatctatatttatatccaaattgaaaatacaatattttcaaaagcaatatttagtgattgtttttccttggtggaccaacacatcgcaacataa |
316 |
Q |
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| T |
8525407 |
acacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgtttttccttggtggaccaacacatcgcaacataa |
8525506 |
T |
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| Q |
317 |
ataattgttaatatttctattggaatctatggccggagaatgtcgatccacaaatgaaatatattgtagagtcatcttaaga |
398 |
Q |
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| T |
8525507 |
ataattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatattgtagagtcatcttaaga |
8525588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 8525220 - 8525249
Alignment:
| Q |
18 |
atgaagcaaagcagagctctcataatgatg |
47 |
Q |
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| T |
8525220 |
atgaagcaaagcagagctctcataatgatg |
8525249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 25520744 - 25520645
Alignment:
| Q |
146 |
gaaagtgttaccaaatagtttatgtgaatgaaaatcaatttaaaaagtaagtgttgatgaaattttaaggaacgcaacatctatatttatatccaaattg |
245 |
Q |
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| T |
25520744 |
gaaagtgttactaaatggtttatgtgaatgaaaaacaa-tagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagccaaattg |
25520646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Original strand, 42125917 - 42125982
Alignment:
| Q |
188 |
aaaagtaagtgttgatgaaattttaaggaacgcaacatctatatttatatccaaattgaaaataca |
253 |
Q |
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| T |
42125917 |
aaaagtaagtgtggatgaaatggtaagaaacacaacctaaatatttatagccaaattgaaaataca |
42125982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 42125748 - 42125780
Alignment:
| Q |
19 |
tgaagcaaagcagagctctcataatgatgacat |
51 |
Q |
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| T |
42125748 |
tgaagcaaagcagagctctcatcatgatgacat |
42125780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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