View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3397_low_3 (Length: 427)
Name: NF3397_low_3
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3397_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 5365352 - 5365761
Alignment:
| Q |
18 |
atcctaggccgcaacgcgatcaacgaagctatcaacgagtcacgacggttattaccgttaccattaccattgccaactgttactgaatgcaaagcattaa |
117 |
Q |
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| T |
5365352 |
atcctaggccgcaacgcgatcaacgaagctatcaacgagtcacgacggttattaccgttaccattaccattgccaactgttactgaatgcaaagcattaa |
5365451 |
T |
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| Q |
118 |
cacaattaacagctaaagcttcatcttctttaatatctaaatccaaaaaattcaaatcagaaagatcgccggagtgatgaataacgttgaatttaaatgg |
217 |
Q |
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| T |
5365452 |
cacaattaacagctaaagcttcatcttctttaatatctaaatccaaaaaattcaaatcagaaagatcgccggagtgatgaataacgttgaatttaaatgg |
5365551 |
T |
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| Q |
218 |
aactcccatgagtcttgcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccaccagcagtgacgatggtagttagacggagg |
317 |
Q |
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| T |
5365552 |
aactcccatgagtctagcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccaccagcagtgacgatggtagttagacggagg |
5365651 |
T |
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| Q |
318 |
tgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcac |
417 |
Q |
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| T |
5365652 |
tgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaatatcaattatgtgcagcttggaatcac |
5365751 |
T |
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| Q |
418 |
cttcgaaggc |
427 |
Q |
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| T |
5365752 |
cttcgaaggc |
5365761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 204 - 403
Target Start/End: Complemental strand, 39987802 - 39987597
Alignment:
| Q |
204 |
ttgaatttaaatggaactcccatgagtcttgcgaatttttccattctagcaccaatttccttcataactttttgaacagaaccacca------gcagtga |
297 |
Q |
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| T |
39987802 |
ttgaatttaaacggcactcccataagcctagcaaatttttccatccttgaaccaatttccttcatgactttttgcaccgagccaccgctgattgcagtga |
39987703 |
T |
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| Q |
298 |
cgatggtagttagacggaggtgaggagtatcgtcagcacgagtggccaacgcttcaaaaagagttggccactgagtgcaataagtgttactaatatcaat |
397 |
Q |
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| T |
39987702 |
ctacagtggttaaacgaaggtgaggcgtatcatcagagcgggtggccaacgcttcgaggagtgttggccattgagtgcaataagtgttgctaatatcaat |
39987603 |
T |
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| Q |
398 |
tatgtg |
403 |
Q |
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|||||| |
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| T |
39987602 |
tatgtg |
39987597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 39987868 - 39987828
Alignment:
| Q |
132 |
aaagcttcatcttctttaatatctaaatccaaaaaattcaa |
172 |
Q |
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| T |
39987868 |
aaagcttcatcttctttaatatctaaatcacacaaattcaa |
39987828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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