View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3397_low_4 (Length: 388)
Name: NF3397_low_4
Description: NF3397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3397_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Complemental strand, 3126090 - 3125729
Alignment:
| Q |
12 |
agagagggagagatggcagggaggcattgttacaaagatgtgctcccattcacagcaatggttgcaatagagtgcacaaacgttggtgttagtgttctat |
111 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3126090 |
agagagagagagatggcagggaggcattgttacaaggatgtgctcccattcacggcaatggttgcaatagagtgcacaaacgttggtgtcagtgttctat |
3125991 |
T |
|
| Q |
112 |
tcaaagcagctactcaaaaagggttgagttactatgtcttcattgcctattcatatgttgtctccactcttgttctccttttgcctctccccttctttat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125990 |
tcaaagcagctactcaaaaagggttgagttactatgtcttcattgcctattcatttgttgtctccactcttgttctccttttgcctctccccttctttat |
3125891 |
T |
|
| Q |
212 |
caaatggtgatctctttttacatagttattagtaattgaaccattcttctctatgaatcattttgtttattgacaacttaaatatgcatatatatgaagg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125890 |
caaatggtgatctctttttacatagttattagtaattgaaccattcttctctatgaatcattttgtttattgacaacttaaatatgcatatatatgaagg |
3125791 |
T |
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| Q |
312 |
tcaagagggcttcctcctttgaacatgtctctactcttcagaatttttctccttggagtttt |
373 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3125790 |
tcaagagggcttcctcctttgaacatgtctctaatcttcagaatttttctccttggagtttt |
3125729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 96 - 373
Target Start/End: Original strand, 3556027 - 3556304
Alignment:
| Q |
96 |
ggtgttagtgttctattcaaagcagctactcaaaaagggttgagttactatgtcttcattgcctattcatatgttgtctccactcttgttctccttttgc |
195 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3556027 |
ggtgttagtgttctattcaaagcagctactcaaaaggagttgagttactatgtcttcattgcctattcatttgttgtctccactcttgttctccttttgc |
3556126 |
T |
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| Q |
196 |
ctctccccttctttatcaaatggtgatctctttttacatagttattagtaattgaaccattcttctctatgaatcattttgtttattgacaacttaaata |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3556127 |
ctctccccttctttatcaaatggtgatctctttttacatagttattagtaattgaaccattcttctctatgaatcattttgtttattgacaacttaaata |
3556226 |
T |
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| Q |
296 |
tgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctactcttcagaatttttctccttggagtttt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3556227 |
tgcatatatatgaaggtcaagagggcttcctcctttgaacatgtctctaatcttcagaatttttctccttggagtttt |
3556304 |
T |
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