View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-1 (Length: 1110)
Name: NF3398-Insertion-1
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-1 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 650
Target Start/End: Complemental strand, 27669062 - 27668417
Alignment:
| Q |
14 |
aaattataagtgctttgaatttgcaatgttagttacaatttctcattcccctatctctctcagcaccaattccaattgcaacatcgatgttgttgcaaaa |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27669062 |
aaatgataagtgctttgaatttgcaatgttagttacaatttctcattcccctgtccctctcagcaccaattccaattgcaacatcgatgttgttgcaaaa |
27668963 |
T |
|
| Q |
114 |
gccatcaatcatgtttaattcagc-tctgatcatagttacgttgtgggcctcttcattgttgtgagtatgaaatatgaaccataaatcaaacatggccgt |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27668962 |
accatcaatcatgtttaattcagcctctgatcatagttacgttgtggacctcttcattgttgtgagtatgaaatatgaaccataaatcaaatatggccgt |
27668863 |
T |
|
| Q |
213 |
taaatatcaagggcttcggtattgaggttagtcatgttggaggagtcaaggtaaaatggttggagtgtggagttgaaaggtgggtatcaaaagactaaga |
312 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27668862 |
taaat--caagggcttcggtattgaggttagtgatgttggaggagtcaaggtaaa-tggttggagtgtggagttgaaaggtgggtatcaaaagactaaga |
27668766 |
T |
|
| Q |
313 |
acaattggctgcgaggaagaaaatgtaagccaacatggttaaggcattaaggaaattgtacttcaatttggaatgaatgcgatgaaagttagccataaca |
412 |
Q |
| |
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||||||| || |||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
27668765 |
acaattgactacgaggacaaaaatgtaagccaacatggttaaggcatcaaggaaattgaacttcaagttggaatgaatgcgatgaaagttagccatgaca |
27668666 |
T |
|
| Q |
413 |
gaaattaattttggatatataaaagaaacc----atgtactagtggtgcttgaatgttatgtatgcagaggcctcaacaagggtgtaaagagaaattgta |
508 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27668665 |
gaaattaattttggatatataaaagaagccatggatgtactagtggtgcttgaatgttatgtatgcagaggcctcaacaagggtgtaaagagaaattgta |
27668566 |
T |
|
| Q |
509 |
ctaacgacgaatctcaatttatcagatca---------tcttcaaacaaaatctcaaaaaactaacgttactccgataattcgagattcgtcattcaaac |
599 |
Q |
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| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27668565 |
cgaatgacgaatctcaatttatcagatcaacgttagtttcttcaaactaaatctcaaaaaactaacgttactccgataatttgagattcgtcattcaaac |
27668466 |
T |
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| Q |
600 |
aagctctttgcacctttgttgaagtctttgcatggcatatcattcaagcat |
650 |
Q |
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| T |
27668465 |
aagctcttt--acatttgttgaagcttttgcatggcatatcattcaagcat |
27668417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 660 - 1069
Target Start/End: Complemental strand, 27668321 - 27667921
Alignment:
| Q |
660 |
ttgctttaaccatgttggtttacattttctttctcgtagacaacgtaaatggtcttggccttttgatcctcgcctttcaactccacacccaaatcattta |
759 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27668321 |
ttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaactccacacccaaatcattta |
27668222 |
T |
|
| Q |
760 |
tcttggctccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcatttttcatacttccaacaatgatgaa |
859 |
Q |
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| T |
27668221 |
tcttgactccgtcaacatcactaacctcaatactgaagccgttgattta------------------tggttcatttttcatacttccaacaatgatgaa |
27668140 |
T |
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| Q |
860 |
tgacctacttcatgcagtgaccttgaggttacggttctgtagtttggaaaagagaatatcaccattgaaaatatgatcttgtcctcgtttacac-agaag |
958 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
27668139 |
tgacctacttcatgcagtgaccttggggttacggttctgtagtttggaaaagagaatatcaccattgaaaatatgatcctgtccccgtttacacaagaag |
27668040 |
T |
|
| Q |
959 |
-cacaacgtaactatgatagagctgaaataaa-gtaatcagtggatttagc-actac-atgatgt--gaactagaa-tagtgctgagagggatagcgtac |
1051 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| || || ||||||| || ||||| ||||||||||||||||||| || |
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| T |
27668039 |
ccacaacgtaactatgatagagctgaaataaaggtaatcagtggatttagcaacaacaatgatgttgaaattagaattagtgctgagagggatagcagac |
27667940 |
T |
|
| Q |
1052 |
tcatgc-aattggatcgta |
1069 |
Q |
| |
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|||||| |||||||||||| |
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| T |
27667939 |
tcatgcaaattggatcgta |
27667921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 719 - 855
Target Start/End: Original strand, 27668773 - 27668909
Alignment:
| Q |
719 |
cttttgatcctcgcctttcaactccacacccaaatcatttatcttggctccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgt |
818 |
Q |
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|||||||| | | |||||||||||||||| | || |||||| |||| |||| ||||||||||||||||||||| |||| | |||||||||||||||| | |
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| T |
27668773 |
cttttgatacccacctttcaactccacactccaaccatttaccttgactcctccaacatcactaacctcaataccgaagcccttgatttaacggccatat |
27668872 |
T |
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| Q |
819 |
ttgatttatggttcatttttcatacttccaacaatga |
855 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||| |
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| T |
27668873 |
ttgatttatggttcatatttcatactcacaacaatga |
27668909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 712 - 864
Target Start/End: Original strand, 27673541 - 27673693
Alignment:
| Q |
712 |
tcttggccttttgatcctcgcctttcaactccacacccaaatcatttatcttggctccgtcaacatcactaacctcaatactgaagtcgttgatttaacg |
811 |
Q |
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|||| |||||||||| | | ||||||||||| |||||| || ||||||||||| |||||||||||| |||||||||||||| |||| | || | |||| |
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| T |
27673541 |
tcttagccttttgatacccacctttcaactcaacaccccaagcatttatcttgactccgtcaacataactaacctcaataccgaagcccttaacttaata |
27673640 |
T |
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| Q |
812 |
gccatgtttgatttatggttcatttttcatacttccaacaatgatgaatgacc |
864 |
Q |
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|||| |||||||| || |||||||||||||||| |||||||||||||| |||| |
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| T |
27673641 |
gccacgtttgattcatcgttcatttttcatactcccaacaatgatgaacgacc |
27673693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 166 - 315
Target Start/End: Complemental strand, 27673684 - 27673538
Alignment:
| Q |
166 |
tcattgttgtgagtatgaaatatgaaccataaatcaaacatggccgttaaatatcaagggcttcggtattgaggttagtcatgttggaggagtcaaggta |
265 |
Q |
| |
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||||||||| |||||||||| |||||| || |||||||| |||| |||| | |||||||||||||||||||||||| |||||| ||||||||| || |
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| T |
27673684 |
tcattgttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagtt--aagggcttcggtattgaggttagttatgttgacggagtcaagata |
27673587 |
T |
|
| Q |
266 |
aaatggttggagtgtggagttgaaaggtgggtatcaaaagactaagaaca |
315 |
Q |
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|| || |||| |||| |||||||||||||||||||||||| ||||||||| |
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| T |
27673586 |
aa-tgcttggggtgttgagttgaaaggtgggtatcaaaaggctaagaaca |
27673538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 218 - 378
Target Start/End: Original strand, 27668176 - 27668340
Alignment:
| Q |
218 |
atcaagggcttcggtattgaggttagtcatgttggaggagtcaaggtaaaatggttggagtgtggagttgaaaggtgggtatcaaaagactaagaaca-- |
315 |
Q |
| |
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||||| |||||| |||||||||||||| |||||| ||||||||| | ||||| || | |||||||||||||||| | | |||||||| |||||| || |
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| T |
27668176 |
atcaacggcttcagtattgaggttagtgatgttgacggagtcaagat-aaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagaccatt |
27668274 |
T |
|
| Q |
316 |
---attggctgcgaggaagaaaatgtaagccaacatggttaaggcattaaggaaattgtacttcaa |
378 |
Q |
| |
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||| || |||| ||||||||| || ||||||||||||| ||| ||||||| || ||||||| |
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| T |
27668275 |
tacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaacaaggaaactgcacttcaa |
27668340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 767 - 838
Target Start/End: Original strand, 8962 - 9033
Alignment:
| Q |
767 |
tccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcattttt |
838 |
Q |
| |
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||||| |||||||| ||||| ||||| ||| |||| |||||||||||| ||||||||||| ||| |||||| |
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| T |
8962 |
tccgttaacatcaccaaccttaataccaaagccgttaatttaacggccacgtttgatttatcgtttattttt |
9033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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