View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-10 (Length: 333)
Name: NF3398-Insertion-10
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 333
Target Start/End: Complemental strand, 45104109 - 45103784
Alignment:
| Q |
8 |
ctttccagtttggttactagcttttgcttttggttctaaactcctcttattattattacttatactctttggtcttgacacttcttctgattctggtgta |
107 |
Q |
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| T |
45104109 |
ctttccagtttggttactagcttttgcttttggttccaaactcctcttattattattacttctactctttgttcttggtacttcttctgattctggtgta |
45104010 |
T |
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| Q |
108 |
gtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtgaacggtgatgatgaaggatgaagctttttccccgagctatctg |
207 |
Q |
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| T |
45104009 |
gtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtggatggtgttgataaaagatgaagttttttccccgagctatctg |
45103910 |
T |
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| Q |
208 |
aaccgtccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtact |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45103909 |
aaccgtccatctcactagaagatgataaactgcttccagaatatgtaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtact |
45103810 |
T |
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| Q |
308 |
tgtttgatgacaatattgcccttgca |
333 |
Q |
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| T |
45103809 |
tgtttgatgacaatattgcccttgca |
45103784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 45130735 - 45130417
Alignment:
| Q |
8 |
ctttccagtttggttactagcttttgcttttggttctaaactcctcttattattattacttatactctttggtcttgacacttcttctgattctggtgta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
45130735 |
ctttccagtttggttactagcttttgcttttggttccaaactcctcttattattattacttctactctttggtattgacacttcttctgattctggtgta |
45130636 |
T |
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| Q |
108 |
gtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtgaacggtgatgatgaaggatgaagctttttccccgagctatctg |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
45130635 |
gtagtagctggtattatggtagatttatcaaaagagagaatgaatgtccttggagtgaacggtgatgatgaaggatgaagctttttctttgagcaatctg |
45130536 |
T |
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| Q |
208 |
aaccgtccatctcactagaagatgataaactgcttccagaatatgcaacaggttgctgaagaattatgtctctcaagaactcttcttcatcatcagtact |
307 |
Q |
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| T |
45130535 |
agccatccatctcattagaggatgata---tacttccagaatatgtaacaggttgctgaaggattatgtctctcaagaactcttcttcatcatcagcact |
45130439 |
T |
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| Q |
308 |
tgtttgatgacaatattgccct |
329 |
Q |
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||||||||||||||||||||| |
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| T |
45130438 |
agtttgatgacaatattgccct |
45130417 |
T |
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