View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3398-Insertion-11 (Length: 296)

Name: NF3398-Insertion-11
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3398-Insertion-11
NF3398-Insertion-11
[»] chr5 (8 HSPs)
chr5 (23-292)||(29572557-29572825)
chr5 (23-292)||(29573934-29574202)
chr5 (23-292)||(29575311-29575579)
chr5 (23-292)||(29576688-29576956)
chr5 (23-292)||(29578065-29578333)
chr5 (23-292)||(29579442-29579710)
chr5 (90-257)||(23923048-23923215)
chr5 (23-109)||(23923242-23923326)
[»] chr7 (4 HSPs)
chr7 (154-259)||(23054802-23054907)
chr7 (154-241)||(47923910-47923997)
chr7 (150-251)||(5865312-5865413)
chr7 (151-212)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (154-222)||(4422889-4422957)
chr1 (184-212)||(48265586-48265614)
[»] chr3 (5 HSPs)
chr3 (164-261)||(9509949-9510046)
chr3 (164-261)||(9517924-9518021)
chr3 (151-212)||(25132349-25132410)
chr3 (23-64)||(25388571-25388612)
chr3 (25-53)||(19875646-19875674)
[»] chr6 (1 HSPs)
chr6 (150-251)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29572557 - 29572825
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29572557 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29572655  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29572656 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29572755  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29572756 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29572825  T

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Target: chr5; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29573934 - 29574202
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29573934 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29574032  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29574033 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29574132  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29574133 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29574202  T

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Target: chr5; HSP #3
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29575311 - 29575579
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29575311 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29575409  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29575410 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29575509  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29575510 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29575579  T

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Target: chr5; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29576688 - 29576956
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29576688 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29576786  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29576787 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29576886  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29576887 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29576956  T

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Target: chr5; HSP #5
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29578065 - 29578333
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29578065 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29578163  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29578164 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29578263  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29578264 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29578333  T

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Target: chr5; HSP #6
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 29579442 - 29579710
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctacta 122  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29579442 tcttttggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctacta 29579540  T
Q  123 tgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | ||||    
T  29579541 tgttctctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactt 29579640  T
Q  223 tctaacattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 292  Q
    |||||| |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29579641 tctaacgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29579710  T

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Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 23923215 - 23923048
Alignment:
Q  90 tagcggagaacatgttgtctttagttgctactatgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggag 189  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||| |            |||||||||||| |||||||||||||| ||| | ||||||    
T  23923215 tagcggagaacaagttgtcttcagttgctactatgttccctctaggttggggggagggggtgaggcttggcagtggaggaggaggttgtgggtgtgggag 23923116  T
Q  190 gaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatca 257  Q
    |||||| ||||||||||||||||  ||| |||||||||| |||||||||||| ||||||||| |||||    
T  23923115 gaggagatgttagcggagtgtaggttgttactttctaacgttattttgcaggttaatgtttctgatca 23923048  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 23923326 - 23923242
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtct 109  Q
    ||||||||||||||||||||||||||||||||||| | ||||   ||||||||| ||   |||||  |||||||||||| |||||||    
T  23923326 tcttttggtttgataggtggttaggagatgtgcctttctgtcaatgttttaggcagt--gtttgacttagcggagaacaagttgtct 23923242  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 259
Target Start/End: Original strand, 23054802 - 23054907
Alignment:
Q  154 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccg 253  Q
    |||||||| |||||||||||||| ||| | ||||||||  || |||||||||||||||| || | |||||||||| ||||| |||||| | || |||| |    
T  23054802 gcttggcagtggaggaggaggttgtgggtgtgggaggaaaagatgttagcggagtgtaggatattactttctaactttattatgcaggttgatatttcgg 23054901  T
Q  254 atcact 259  Q
    ||||||    
T  23054902 atcact 23054907  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 47923997 - 47923910
Alignment:
Q  154 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagg 241  Q
    |||||||| |||||||||||||| ||| | |||||||| ||| |||||| ||||||||  | || |||||||||| || |||||||||    
T  47923997 gcttggcagtggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgtatgacgttactttctaacgttgttttgcagg 47923910  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 5865413 - 5865312
Alignment:
Q  150 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 249  Q
    |||||| ||||| |||||| ||| ||| |||   || ||||||||||||||||||||||||||  ||| |||| ||||  ||| |||||||  |||||||    
T  5865413 tgaggcgtggcagtggaggcggatgttgtgggcgtgagaggaggagttgttagcggagtgtaggttgttacttgctaatgttactttgcagattaatgtt 5865314  T
Q  250 tc 251  Q
    ||    
T  5865313 tc 5865312  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Original strand, 22819552 - 22819613
Alignment:
Q  151 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 212  Q
    ||||| ||||||||| | |||||||| |||   ||||||||||||||||||| |||||||||    
T  22819552 gaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtag 22819613  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 4422957 - 4422889
Alignment:
Q  154 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 222  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||| |||| ||||    
T  4422957 gcttggcagtggaggaggaggttgtgggtatgagaggaagagttgttagcggagtgtaggatgttactt 4422889  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 48265586 - 48265614
Alignment:
Q  184 tgggaggaggagttgttagcggagtgtag 212  Q
    |||||||||||||||||||||||||||||    
T  48265586 tgggaggaggagttgttagcggagtgtag 48265614  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 9510046 - 9509949
Alignment:
Q  164 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 261  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9510046 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9509949  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 9518021 - 9517924
Alignment:
Q  164 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 261  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9518021 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9517924  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 25132410 - 25132349
Alignment:
Q  151 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 212  Q
    ||||||||| ||||||| |||||||| ||| | ||||||||||||||  ||| |||||||||    
T  25132410 gaggcttggaaatggagaaggaggttgtgggtgtgggaggaggagttactaggggagtgtag 25132349  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 25388571 - 25388612
Alignment:
Q  23 tcttttggtttgataggtggttaggagatgtgcctctttgtc 64  Q
    ||||||||| ||||||||||||||||| ||| ||||||||||    
T  25388571 tcttttggtatgataggtggttaggaggtgttcctctttgtc 25388612  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 19875674 - 19875646
Alignment:
Q  25 ttttggtttgataggtggttaggagatgt 53  Q
    |||||||||||||||||||||||||||||    
T  19875674 ttttggtttgataggtggttaggagatgt 19875646  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 900688 - 900789
Alignment:
Q  150 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 249  Q
    |||||| ||||| || | ||||||||| |||   |||||||| ||||||||||||||||||||  ||| |||| ||||  ||| ||||||||  ||||||    
T  900688 tgaggcgtggcagtgaaagaggaggttgtgggcgtgggaggatgagttgttagcggagtgtaggttgttacttgctaatgttactttgcaggtcaatgtt 900787  T
Q  250 tc 251  Q
    ||    
T  900788 tc 900789  T

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