View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-13 (Length: 234)
Name: NF3398-Insertion-13
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-13 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 41728996 - 41729095
Alignment:
| Q |
7 |
atctcaaaggccacaaaaattgtgcctaaaaaattcatcaaatgtgtccttcataagaccaactcaattaacaatactgatgttgttagattgaacactt |
106 |
Q |
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| T |
41728996 |
atctcaaaggccacaaaaattgtgcctataaaatttatcaaatgtgtccttcataagaccaactcaattaacaatactgatgttgttagattgaacactt |
41729095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 227
Target Start/End: Original strand, 41729479 - 41729591
Alignment:
| Q |
117 |
tatgtgttagtttcataaaattttgtcacttcctt--tatnnnnnnnnccaatgtgaaattgtaaagacatttattccaaatctatccttgcacgtttat |
214 |
Q |
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| T |
41729479 |
tatgttttagtttcataaaattttgtcacttccttcgtaaaaaaaaatccaatgtgaaattgtaaagacatttattcccaatctatccttgcacgtttat |
41729578 |
T |
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| Q |
215 |
atggttatttaca |
227 |
Q |
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| T |
41729579 |
atggttatttaca |
41729591 |
T |
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