View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3398-Insertion-4 (Length: 713)

Name: NF3398-Insertion-4
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3398-Insertion-4
NF3398-Insertion-4
[»] chr3 (1 HSPs)
chr3 (8-713)||(29357070-29357772)


Alignment Details
Target: chr3 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 8 - 713
Target Start/End: Complemental strand, 29357772 - 29357070
Alignment:
Q  8 gatgttatgcagaagcaacannnnnnnatgaacttgatgaataatggtggtggggatcaggcacctcctatgggaaatgtcaatcccccaaatgggtttt 107  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29357772 gatgttatgcagaagcaacatttttttatgaacttgatgaataatggtggtggggatcaggcacctcccatgggaaatgtcaatcccccaaatgggtttt 29357673  T
Q  108 ggccaaatccatttttccgttgaagcgtcatgtggttgttacttgttaccatcgctttgtatttggttgttattgtcattgtgttttgatatgaattaag 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29357672 ggccaaatccatttttccgttgaagcgtcatgtggttgttactttttaccatcgctttgtatttggttgttat-gtcattgtgttttgatatgaattaag 29357574  T
Q  208 actaaaaataagtgactgtggatttgtccatggtctgggatttgcatgtttgtttctttgtgtcatcactttgtatctgtcttgtttataagtgtgtttg 307  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  29357573 actaaaa-taagtgactgtggatttgtccatggtc-gggatttgcatgtttgtttctttgtttcatcactttgtatctgtcttgtttataagagtgtttg 29357476  T
Q  308 atttctgtaagnnnnnnnaagttgaataaatatcgttttggaatgagttgttatttgatatatttttacttgtttatcaagaattgccttgaaaattcct 407  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357475 atttctgtaagtttttttaagttgaataaatatcgttttggaatgagttgttatttgatatatttttacttgtttatcaagaattgccttgaaaattcct 29357376  T
Q  408 gttatactcattgattgatatctcaattttttcttgtgtgaactggtatagtttttgattcgaagagtttttcatgatcatgattagtaatgactaatct 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357375 gttatactcattgattgatatctcaattttttcttgtgtgaactggtatagtttttgattcgaagagtttttcatgatcatgattagtaatgactaatct 29357276  T
Q  508 atatcgaagaacttgttggacacggcgtaaattctccttacccaatcatgttatctccatatgcaagtcagggattgaataacaaggttttccacacaag 607  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357275 atatcgaagaacttgttggacatggcgtaaattctccttacccaatcatgttatctccatatgcaagtcagggattgaataacaaggttttccacacaag 29357176  T
Q  608 gtgaagtccattaccactcgaacgaaataaacatcaattttcataacctaaatgctaaaatgcaaaatacaaatttcaaaaagctcacaaaacattttag 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29357175 gtgaagtccattaccactcgaacgaaataaacatcaattttcataacctaaatgctaaaatgcaaaatacaaatttcaaaaagctcacaaaacattttag 29357076  T
Q  708 tttaag 713  Q
    ||||||    
T  29357075 tttaag 29357070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University