View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-6 (Length: 679)
Name: NF3398-Insertion-6
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 33158607 - 33158951
Alignment:
| Q |
8 |
gttacatcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaag |
107 |
Q |
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| T |
33158607 |
gttacatcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaag |
33158706 |
T |
|
| Q |
108 |
attctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33158707 |
attctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgt |
33158806 |
T |
|
| Q |
208 |
gggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatcttataaaaccttttattatgttcaaaactc- |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||| | ||||||| |
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| T |
33158807 |
gggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcgtaaattttataaaatctcttattacaatgaaaactct |
33158906 |
T |
|
| Q |
307 |
-atatattatgatttttcttatgaatctaattaacatgtactaat |
350 |
Q |
| |
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| |||| ||||| || |||||||| |||||| ||||||||||| |
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| T |
33158907 |
tacatatcatgataatttttatgaatttaattaccatgtactaat |
33158951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 33181450 - 33181794
Alignment:
| Q |
8 |
gttacatcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaag |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33181450 |
gttacatcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaag |
33181549 |
T |
|
| Q |
108 |
attctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgt |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33181550 |
attctgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgt |
33181649 |
T |
|
| Q |
208 |
gggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatcttataaaaccttttattatgttcaaaactc- |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||| | ||||||| |
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| T |
33181650 |
gggttgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcgtaaattttataaaatctcttattacaatgaaaactct |
33181749 |
T |
|
| Q |
307 |
-atatattatgatttttcttatgaatctaattaacatgtactaat |
350 |
Q |
| |
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| |||| ||||| || |||||||| |||||| ||||||||||| |
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| T |
33181750 |
tacatatcatgataatttttatgaatttaattaccatgtactaat |
33181794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 376 - 679
Target Start/End: Original strand, 33181903 - 33182206
Alignment:
| Q |
376 |
agtaatatttacctatattgtgaaacataattatgtttgtgacaaagcttttttacatatccagtgcatattatttctagaagtttaatatattgtccat |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33181903 |
agtaatatttacctatattgtgaaacataattatgtttgtgacaaagcttttttacatatccagtgcatattatttctagaagtttaatatactgtccat |
33182002 |
T |
|
| Q |
476 |
tctcttcattgttgacaagtttaaattgagaaagnnnnnnnnnnncgtgactaataaatttcctttgaaaaatgaagagggaggatgacattgtcatcat |
575 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182003 |
tctctttattgttgacaagtttaaattgagaaagaaaaaaaaaaacgtgactaataaatttcctttgaaaaatgaagagggaggatgacattgtcatcat |
33182102 |
T |
|
| Q |
576 |
ttgtggaggtaaggataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacacttccattgag |
675 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33182103 |
ttgtggaggtaaagataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacacttccattgag |
33182202 |
T |
|
| Q |
676 |
ttga |
679 |
Q |
| |
|
|||| |
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|
| T |
33182203 |
ttga |
33182206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 376 - 679
Target Start/End: Original strand, 33159060 - 33159362
Alignment:
| Q |
376 |
agtaatatttacctatattgtgaaacataattatgtttgtgacaaagcttttttacatatccagtgcatattatttctagaagtttaatatattgtccat |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159060 |
agtaatatttacctatattgtgaaacataattatgtttgtgacaaagcttttttacatatccagtgcatattatttctagaagtttaatatattgtccat |
33159159 |
T |
|
| Q |
476 |
tctcttcattgttgacaagtttaaattgagaaagnnnnnnnnnnncgtgactaataaatttcctttgaaaaatgaagagggaggatgacattgtcatcat |
575 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159160 |
tctctttattgttgacaagtttaaattgagaaagaaaaaaaaaa-cgtgactaataaatttcctttgaaaaatgaagagggaggatgacattgtcatcat |
33159258 |
T |
|
| Q |
576 |
ttgtggaggtaaggataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacacttccattgag |
675 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33159259 |
ttgtggaggtaaagataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacacttccattgag |
33159358 |
T |
|
| Q |
676 |
ttga |
679 |
Q |
| |
|
|||| |
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|
| T |
33159359 |
ttga |
33159362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 12 - 284
Target Start/End: Original strand, 33140264 - 33140536
Alignment:
| Q |
12 |
catcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaagattc |
111 |
Q |
| |
|
|||||||||||| | || |||||||||| || |||||||||||||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||| |
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|
| T |
33140264 |
catcactttgcaccaattaaaggcatcaagtacataaaggaggagttgcatttcaagcagaagcctttatttgttgtgttgagcccacaaggaaagattc |
33140363 |
T |
|
| Q |
112 |
tgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgtgggt |
211 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
33140364 |
tgcatcataatgcattccatatgattcaggtttggggagtaaagggcttcccttactccaaatccaaagaagaatcaatgacccaagaattaatgtgggt |
33140463 |
T |
|
| Q |
212 |
tgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatcttataaaa |
284 |
Q |
| |
|
||||||| |||||| || |||||||||||||||||| |||||| || ||| | || |||||||||||| |||| |
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|
| T |
33140464 |
tgattccctgctggctgacattgatataaagattaaatgggtacgtatttcgctgatcataaatcttaaaaaa |
33140536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 278
Target Start/End: Complemental strand, 33288038 - 33287772
Alignment:
| Q |
12 |
catcactttgcaaccataaaaggcatcaggttcataaaggaggagttgcatttcaagctgaatcctttggttgttgtgttgagtacacaaggaaagattc |
111 |
Q |
| |
|
|||||||||||| | || |||||||||| || |||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
33288038 |
catcactttgcaccaattaaaggcatcaagtacataaaggaggagttgcatttcaatcagaagcctttggttgttgtgttgagcccacaaggaaagattc |
33287939 |
T |
|
| Q |
112 |
tgcatcagaatgcatttcatatgattcatgtttggggagtaaagggattccctttcaccaaaaccaaagaagaatcaatgacccaagaactaatgtgggt |
211 |
Q |
| |
|
||||||| |||||||| ||||||||||| |||||||| |||||||| || |||| |||| || ||||||| ||||||| ||||| ||| ||| |||||| |
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|
| T |
33287938 |
tgcatcataatgcattccatatgattcaagtttggggggtaaagggttttccttacaccgaagacaaagaaaaatcaataacccaggaattaaagtgggt |
33287839 |
T |
|
| Q |
212 |
tgattccgtgctggttggcattgatataaagattaagtgggtaagtgtttggttggtcataaatctt |
278 |
Q |
| |
|
|| |||| || |||||| |||||||||| ||||||| ||||||||| ||| | |||||| ||||||| |
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|
| T |
33287838 |
tgtttccttgttggttgacattgatatacagattaaatgggtaagtattttgctggtcacaaatctt |
33287772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 567 - 674
Target Start/End: Original strand, 33140630 - 33140737
Alignment:
| Q |
567 |
tgtcatcatttgtggaggtaaggataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacact |
666 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||| ||||| |||||| |||||| || | |||||||||| ||||||||||||| || ||| |
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|
| T |
33140630 |
tgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatgctggtgctctagcaaatgatgccgctattaagcagacgaagact |
33140729 |
T |
|
| Q |
667 |
tccattga |
674 |
Q |
| |
|
|| ||||| |
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|
| T |
33140730 |
tcaattga |
33140737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 535 - 678
Target Start/End: Complemental strand, 33287514 - 33287371
Alignment:
| Q |
535 |
ttcctttgaaaaatgaagagggaggatgacattgtcatcatttgtggaggtaaggataaggaatggattcaacaattcacaaagtattttggtgccctgg |
634 |
Q |
| |
|
|||||||||||||||||| |||||| | |||| ||||||| ||||||||| ||||||| |||||| ||| ||||||| |||| | | |||||| | |
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|
| T |
33287514 |
ttcctttgaaaaatgaaggaggaggagaagtttgttatcatttatggaggtaaagataaggcatggatccaagaattcaccaagtttgctactgccctag |
33287415 |
T |
|
| Q |
635 |
taaatgatgccactattaagcagacaaacacttccattgagttg |
678 |
Q |
| |
|
||||||| | | |||||||||| |||| ||||| ||||||||| |
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|
| T |
33287414 |
caaatgatacaaatattaagcaggcaaagacttcaattgagttg |
33287371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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