View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3398-Insertion-7 (Length: 595)

Name: NF3398-Insertion-7
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3398-Insertion-7
NF3398-Insertion-7
[»] chr2 (5 HSPs)
chr2 (8-595)||(37652618-37653205)
chr2 (475-535)||(34209573-34209635)
chr2 (475-524)||(2241519-2241569)
chr2 (474-524)||(31928130-31928180)
chr2 (475-524)||(31795855-31795904)
[»] chr6 (4 HSPs)
chr6 (475-535)||(30849987-30850047)
chr6 (475-524)||(2892689-2892738)
chr6 (478-517)||(16738089-16738128)
chr6 (475-535)||(2892916-2892978)
[»] chr7 (3 HSPs)
chr7 (475-524)||(26365877-26365926)
chr7 (478-535)||(7791831-7791890)
chr7 (475-535)||(47390964-47391027)
[»] chr1 (3 HSPs)
chr1 (475-535)||(36285647-36285709)
chr1 (475-535)||(42230647-42230709)
chr1 (475-518)||(44210997-44211040)
[»] chr8 (5 HSPs)
chr8 (475-527)||(38198132-38198184)
chr8 (475-518)||(41103598-41103641)
chr8 (475-535)||(24243121-24243182)
chr8 (475-535)||(29358413-29358474)
chr8 (475-523)||(36308952-36309001)
[»] chr5 (4 HSPs)
chr5 (475-511)||(13839827-13839863)
chr5 (475-535)||(10072720-10072782)
chr5 (478-530)||(42681565-42681619)
chr5 (475-516)||(2550447-2550487)
[»] chr4 (2 HSPs)
chr4 (475-524)||(17938191-17938242)
chr4 (475-518)||(6891469-6891512)
[»] chr3 (4 HSPs)
chr3 (475-535)||(41040023-41040085)
chr3 (475-535)||(41110394-41110456)
chr3 (475-531)||(52185125-52185183)
chr3 (475-535)||(45663218-45663279)
[»] scaffold0012 (1 HSPs)
scaffold0012 (474-524)||(184715-184765)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 595
Target Start/End: Complemental strand, 37653205 - 37652618
Alignment:
Q  8 agaaacctaggcagggtcaatacttcgataagatttcaacagtgttagtacttaaacacatgaaaaacatataaaccccaaatactaggcaatcaaatag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||||||||||    
T  37653205 agaaacctaggcagggtcaatacttcgataagatttcaacagtgctagtacttaaacacatgaaaaacatataa-ctccaaatactagtcaatcaaatag 37653107  T
Q  108 aagaatgttgtaccactccacattaagaacttatatatttatttaatatggaccttttaacattgtcgcaccttttaagagttgtgtccgctgcaacttt 207  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||    
T  37653106 aagaatgttgtaccactccacattaagaacttatat--ttatttaatatggactttttaacattgtcacaccttttaagagttgtgtcc-cggcaacttt 37653010  T
Q  208 actctatgaaactgatttgattgtaaccctttcttttttagaggcttta---tttgcctattagcatatgcggacaccttgaccgacttataagtagaat 304  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||   ||||||| ||||||||||||| |||||| ||| |||||||||||| ||    
T  37653009 actctatgaaactgatttgattgtaacc-tttcttttttagaggctttagtatttgcctgttagcatatgcgggcaccttaaccaacttataagtagcat 37652911  T
Q  305 tttctatggccaaactcacaattaaagcaccaatgttcaatgagaaataattctta-gagtatatttgaattgcaggcttacaagggaaagtaaggggag 403  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  37652910 tttctatggccaaactcgcaattaaagcaccaatggtcaatgagaaataattcttaagagtatatttgaattgcaggcttacaagggaaagtaaggggac 37652811  T
Q  404 aaacttacttttttataaaattacggataatataaaatgttttcgttaaaagaaattaagtgtaattgaatttgaagtattatatgattgtatatcatgt 503  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37652810 aaacttacttttttataaaattacggataatataaaatgttttcattaaaataaattaagtgtaattgaatttgaagtattatctgattgtatatcatgt 37652711  T
Q  504 tattattttaattttaa---aaaatattttatagtccctgnnnnnnnnnttatagtgatatatgtaactttaaagagaaaattaagtcatttccc 595  Q
    |||||||| ||||||||   ||||||||||||||||| ||         |||||||||||||||||| |||||||||||||||||||||||||||    
T  37652710 tattatttcaattttaaaaaaaaatattttatagtccatg--aaaaaaattatagtgatatatgtaattttaaagagaaaattaagtcatttccc 37652618  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 34209573 - 34209635
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    ||||||| |||||||||||| |||||||||| ||| ||||  ||||||||||||||| |||||    
T  34209573 ttgaagtgttatatgattgtttatcatgttaatatgttaactttttaaaaaatatttcatagt 34209635  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 2241519 - 2241569
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattat-tttaattttaaaaaa 524  Q
    |||||||||||||||||||| |||||||||| ||| || ||||||||||||    
T  2241519 ttgaagtattatatgattgtttatcatgttaatatgttaaattttaaaaaa 2241569  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 31928180 - 31928130
Alignment:
Q  474 tttgaagtattatatgattgtatatcatgttattattttaattttaaaaaa 524  Q
    ||||||||||||||||||  | ||||||||||||| || ||||||||||||    
T  31928180 tttgaagtattatatgatcatttatcatgttattaattcaattttaaaaaa 31928130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 31795904 - 31795855
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaattttaaaaaa 524  Q
    ||||||||||||||||| || ||||||||| |||||||| |||| |||||    
T  31795904 ttgaagtattatatgatcgtttatcatgttgttattttattttttaaaaa 31795855  T

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Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 30850047 - 30849987
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaattttaaaaaatattttatagt 535  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  30850047 ttgaagtattatatgatcgtttatcatgttattattttaattttaaaaaatattttatagt 30849987  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 2892738 - 2892689
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaattttaaaaaa 524  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  2892738 ttgaaatattatatgattgtttatcatgttattattttaatttttaaaaa 2892689  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 16738128 - 16738089
Alignment:
Q  478 aagtattatatgattgtatatcatgttattattttaattt 517  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  16738128 aagtattatatgatcgtatatcatgttattattttaattt 16738089  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 2892978 - 2892916
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatt--ttaaaaaatattttatagt 535  Q
    ||||||||||||||||| || |||||||||||||||||| ||  ||| ||||||||| |||||    
T  2892978 ttgaagtattatatgatcgtttatcatgttattattttactttcttacaaaatatttcatagt 2892916  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 524
Target Start/End: Original strand, 26365877 - 26365926
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaattttaaaaaa 524  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26365877 ttgaagtattatatgattgtttctcatgttattattttaattttaaaaaa 26365926  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 535
Target Start/End: Original strand, 7791831 - 7791890
Alignment:
Q  478 aagtattatatgattgtatatcatgttattattttaatttt--aaaaaatattttatagt 535  Q
    ||||||||||||||| | ||||||||| |||||| ||||||  ||||| |||||||||||    
T  7791831 aagtattatatgattatttatcatgtttttatttcaattttcaaaaaagtattttatagt 7791890  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 47390964 - 47391027
Alignment:
Q  475 ttgaagtattatatga-ttgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    |||||||||||||||| |||| |||||||||| ||| ||||  ||||||||||| |||||||||    
T  47390964 ttgaagtattatatgacttgtttatcatgttaatatgttaacattttaaaaaatgttttatagt 47391027  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 36285709 - 36285647
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    ||||||||||||||||| || |||||||||| ||| ||||  |||||||||||||||||||||    
T  36285709 ttgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaatattttatagt 36285647  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Original strand, 42230647 - 42230709
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    |||||||||||||||||||| ||| |||||| ||||||||  || ||||||| ||||||||||    
T  42230647 ttgaagtattatatgattgtttattatgttaatattttaactttataaaaaacattttatagt 42230709  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 44211040 - 44210997
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatttt 518  Q
    ||||||||||||||||| || ||||||||| |||||||||||||    
T  44211040 ttgaagtattatatgatcgtttatcatgttgttattttaatttt 44210997  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 38198184 - 38198132
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaattttaaaaaatat 527  Q
    |||||||||||||||||  ||||||||||| |||||| |||||| ||||||||    
T  38198184 ttgaagtattatatgatcatatatcatgttgttatttcaatttttaaaaatat 38198132  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Complemental strand, 41103641 - 41103598
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatttt 518  Q
    ||||||||||||||||| || |||||||||||| ||||||||||    
T  41103641 ttgaagtattatatgatcgtttatcatgttattgttttaatttt 41103598  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 24243182 - 24243121
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa-ttttaaaaaatattttatagt 535  Q
    |||||||||||||||||  | |||||||||||||||| || |||||||| | ||||||||||    
T  24243182 ttgaagtattatatgatcatttatcatgttattatttcaatttttaaaagacattttatagt 24243121  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 29358474 - 29358413
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa-ttttaaaaaatattttatagt 535  Q
    ||||||||||||| ||| || ||| |||||| ||| |||| |||||||||||||||||||||    
T  29358474 ttgaagtattataggatcgtttataatgttaatatgttaatttttaaaaaatattttatagt 29358413  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 523
Target Start/End: Original strand, 36308952 - 36309001
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattat-tttaattttaaaaa 523  Q
    |||||||||||||||||||| |||||||||| ||| |||| |||||||||    
T  36308952 ttgaagtattatatgattgtttatcatgttaatatgtttacttttaaaaa 36309001  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 13839863 - 13839827
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattt 511  Q
    |||||||||||||||||||| ||||||||||||||||    
T  13839863 ttgaagtattatatgattgtctatcatgttattattt 13839827  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 10072782 - 10072720
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    ||||||||||||||||| || |||||||||| ||| ||||  ||||||||||||||| |||||    
T  10072782 ttgaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaatatttcatagt 10072720  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 42681565 - 42681619
Alignment:
Q  478 aagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatatttt 530  Q
    ||||||||||||||  | |||||||||||||||||||  ||||||||||||||||    
T  42681565 aagtattatatgatcatttatcatgttattattttaattttttaaaaaatatttt 42681619  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 2550487 - 2550447
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatt 516  Q
    |||||||||||||||||||| ||||||| |||||||||||||    
T  2550487 ttgaagtattatatgattgtttatcatg-tattattttaatt 2550447  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 524
Target Start/End: Complemental strand, 17938242 - 17938191
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaa 524  Q
    ||||||||||||||||| || |||||||||||||||||||  ||||||||||    
T  17938242 ttgaagtattatatgatcgtttatcatgttattattttaaatttttaaaaaa 17938191  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 518
Target Start/End: Original strand, 6891469 - 6891512
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatttt 518  Q
    ||||||||||||||||| || ||| |||||||||||||||||||    
T  6891469 ttgaagtattatatgatcgtttataatgttattattttaatttt 6891512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 41040085 - 41040023
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    |||||||||||||||||||| |||||||||| ||| ||||  ||||| ||||||||| |||||    
T  41040085 ttgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttcatagt 41040023  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 41110456 - 41110394
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatattttatagt 535  Q
    |||||||||||||||||||| |||||||||| ||| ||||  ||||| ||||||||| |||||    
T  41110456 ttgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttcatagt 41110394  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 531
Target Start/End: Original strand, 52185125 - 52185183
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaa--ttttaaaaaatatttta 531  Q
    |||||||||||||||||||| |||||||||| ||| ||||  ||||| |||||||||||    
T  52185125 ttgaagtattatatgattgtttatcatgttaatatgttaactttttataaaatatttta 52185183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 535
Target Start/End: Complemental strand, 45663279 - 45663218
Alignment:
Q  475 ttgaagtattatatgattgtatatcatgttattattttaatttt-aaaaaatattttatagt 535  Q
    ||||||||||||| |||  | ||||||||| |||||| |||||| |||||||||||||||||    
T  45663279 ttgaagtattataagatcatttatcatgttgttatttcaattttcaaaaaatattttatagt 45663218  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Original strand, 184715 - 184765
Alignment:
Q  474 tttgaagtattatatgattgtatatcatgttattattttaattttaaaaaa 524  Q
    ||||||||||||||||||  ||||||||||| ||| || ||||||||||||    
T  184715 tttgaagtattatatgataatatatcatgttgttaattcaattttaaaaaa 184765  T

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