View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-8 (Length: 564)
Name: NF3398-Insertion-8
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Original strand, 28714418 - 28714965
Alignment:
| Q |
17 |
cgtgcaccaaccacatgtgctataccccggtggtgtctactcgatatatcaaagctttaatgtttcttgaatggtgataaattgatgctgagcattattt |
116 |
Q |
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| T |
28714418 |
cgtgcactaaccacatatgctataccccggtggtgtctactcgatgtatcaaagctttaatgtttcgtgaatggtgataaattgatgctgagcattattt |
28714517 |
T |
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| Q |
117 |
cttattagaatcagttggtggtggttcatttttattgaaattagtcacgacacacgcattgatttcatttttagtatttttcatgtttgaaatggggggt |
216 |
Q |
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| T |
28714518 |
cttattagaatcagttggtggtggttcatttttattgaaattagtcacgacgcacgcattgatttcatttttagtatttttcatgtttgaaatggggggt |
28714617 |
T |
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| Q |
217 |
atcgattatttcatgcttgtatgtattgctgcatggcgccatgttgtattgtatctagtctatgcataaggaatcatattttttgaactaatttccatat |
316 |
Q |
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| T |
28714618 |
atcaattatttcatgcttgtatgtattgctgcatggcgccatgttgtattgtatctagtctatgaataaggaatcatattttttgaactaatttccatat |
28714717 |
T |
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| Q |
317 |
tcattaaatttaatattttattcttatgaatcagtcaatggttttactatttagacattcatgatgggttttgaacttatgaatcagtcaataataactt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28714718 |
tcattaaatttaatattttattcttatgaatcagtcaatggttttactatttagacattcatgatgggttttgaacttatgaatcggtcaataataactt |
28714817 |
T |
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| Q |
417 |
tataaatagattatgtacaaataattcatggacaatttcgatcacttcattcggatattagagtgctagttagtcgaagcttaaatgccgttatgagctg |
516 |
Q |
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| T |
28714818 |
tataaatagattatgtacaaataattcatggacaatttcgatcacttcattcggatattaaagtgctagttagtggaagcttaaatgccgttatgagctg |
28714917 |
T |
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| Q |
517 |
aagtgtgttgctttgtttatattttccaatggatttgttatcattgaa |
564 |
Q |
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| T |
28714918 |
aagtgtgttgctttgtttatattttccaatggattggttattattgaa |
28714965 |
T |
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