View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398-Insertion-9 (Length: 322)
Name: NF3398-Insertion-9
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 44 - 306
Target Start/End: Complemental strand, 25348802 - 25348544
Alignment:
| Q |
44 |
agaaatagcttatgtatacacagacacttatcatcataaaagataagatgtttatgccaacaatgttggtaacattactccgtgctgttaaaagctttca |
143 |
Q |
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| T |
25348802 |
agaaatagcttatgtatacacagacacttatcatcataaaagataagatgtttatgccaacaatgttggtaacattactccgtgctgttaaaagctttca |
25348703 |
T |
|
| Q |
144 |
aatgnnnnnnnttaggcacaccaaaggaacctaacccttcgggtcnnnnnnnctttaatagcaaagtgtcatcaaaggaatctaaatgccaccggcaagt |
243 |
Q |
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|||| ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||||||||| || || | |
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| T |
25348702 |
aatgaaaaaaattaggcacaccaaaggaacctaa-----cgggtctctttttctttaatagcaaagtgccaccaaaggaatctaaatgccactggtaaat |
25348608 |
T |
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| Q |
244 |
attagtaattagttgttata-nnnnnnnnaccatttcgtccaaatttgaacatagaactttcaa |
306 |
Q |
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||||||||||||||||| | |||||||||| ||||||||||||||||||||||| |
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| T |
25348607 |
gttagtaattagttgttacatttttttttaccatttcgtttaaatttgaacatagaactttcaa |
25348544 |
T |
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