View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398R-Insertion-1 (Length: 1009)
Name: NF3398R-Insertion-1
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398R-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 597; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 597; E-Value: 0
Query Start/End: Original strand, 294 - 996
Target Start/End: Complemental strand, 8792860 - 8792159
Alignment:
| Q |
294 |
agacactgagaatttgtcctaatctgcctcatccttagtactaatagcatacttaatctcacccctgcttgtaacctgatagctcatgcatgagtttggt |
393 |
Q |
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| T |
8792860 |
agacactgagaatttgtcctaatctgcctcatccttagtactaatagcatacttaatctcacccctgcttctaacctgatagctcatgcatgagtttggt |
8792761 |
T |
|
| Q |
394 |
ccccattttcaggccatatctcatctaaaatccgactcgaaacataagctactgattattgaatattcacaatcaaattcaggaaattgataaagttggt |
493 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
8792760 |
cctcattttcaggccatatctcatctaaaatccgactcgaaacataagctactgattattgaatattcacaatcaaattcaggaaattgataaactcggt |
8792661 |
T |
|
| Q |
494 |
ttcatctatattgcatgatcctcaaaattatttcttgcaacggttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattac |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792660 |
ttcatctatattgcatgatcctcaaaattatttcttgcaacggttctacaaacaatattgttcacaagcaaggtataattttttgtcataccaaaattac |
8792561 |
T |
|
| Q |
594 |
aagggttgtaatctatctacagaatgcaggacaatgatatagaatatgctgctgcacaaagtggaacttgttatcgatgcaagtgaaaataaatcaatag |
693 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792560 |
aagggttgtaatctatctacagaatgcaggacaatgatataaaatatgctgctgcacaaagtggaacttgttatcgatgcaagtgaaaataaatcaatag |
8792461 |
T |
|
| Q |
694 |
acttcaacattccattgctctgccttcttcagcgatctcttgtactcaatccaatcaatacctacaacacataacaaacacaacatgatgactatagttt |
793 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8792460 |
acttcaacattccattgctctgccttcttcagcgatctcttgtactcaatccaatcaatacctacaacacataacaaacacaacatgatgactatagttt |
8792361 |
T |
|
| Q |
794 |
ctctgattcttgaatnnnnnnntttgatagacagatgttagtattttctccttcttcaaggtttgaattcaatccttctaaccattagctgaaaccagtt |
893 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
8792360 |
ctctgattcttgaat-aaaaaatttgatagacagatgttagtattttttccttcttcaaggtttgaattcaatccttctaaccattagctcaa--cagtt |
8792264 |
T |
|
| Q |
894 |
gagctatccaaaacccccctctatgcttcatgtaataaaaattcaatgt-tttttctta-cgtctttggcagcgagtgaaa-cattatgtcatcaattcc |
990 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
8792263 |
gagctatcc-aaacccccctctatgcttcatgtaataaatattcaaaatgtttttcttaccgtctttggcagcgagtgaaaccattatgtcatcaattcc |
8792165 |
T |
|
| Q |
991 |
cttttc |
996 |
Q |
| |
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|||||| |
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| T |
8792164 |
cttttc |
8792159 |
T |
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