View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398R-Insertion-11 (Length: 123)
Name: NF3398R-Insertion-11
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398R-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 76; Significance: 1e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 887403 - 887296
Alignment:
| Q |
8 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtagttcaaacttc |
107 |
Q |
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| T |
887403 |
atataattacttaattagaggatcataaaatcaaaggtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttc |
887304 |
T |
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| Q |
108 |
acattgtt |
115 |
Q |
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| T |
887303 |
acattgtt |
887296 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
8 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
66 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 63
Target Start/End: Complemental strand, 31900076 - 31900049
Alignment:
| Q |
36 |
aatcaaaggtagcttaataaaaaggtgc |
63 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
31900076 |
aatcaaaggtagcttaataaaaaggtgc |
31900049 |
T |
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