View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398R-Insertion-2 (Length: 1003)
Name: NF3398R-Insertion-2
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398R-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 599; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 70 - 719
Target Start/End: Complemental strand, 28714336 - 28713689
Alignment:
| Q |
70 |
ggtgcattgagaaggcagtacagaactacagtctatggattaaaggagcaatctgaatcttagggcaactggaaagatggaaaacaaaatatggaaaacc |
169 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
28714336 |
ggtgcgttgagaaggcagtacagaactacagtctatggattaaaggagcaatctgaatcttagggtaactggaaagatggaaaacaaaatacggaaaacc |
28714237 |
T |
|
| Q |
170 |
aacactgaacttcaattgcagagataattatgctcgtctattcagttgcacaaagaattggaacaggatagatcctctcaacaaattgcaagttacaaat |
269 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28714236 |
aacactgaacttcaattgcagagataattatgcttgtctattcagttgcacaaagaattggaacaggataggtcctctcaacaaattgcaagttacaaat |
28714137 |
T |
|
| Q |
270 |
cacaacttacttcagaaacaaagtaacttcaaagtccaattactggattcacagttcaaagcaaacaaaagttgatccaaaaggcatgcaaaggggtcaa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28714136 |
cacaacttacttcagaaacaaagtaacttcaaagtccaattactggattcacagttcaaagcaaacaaaagttgatccaaaaggcgtgcaaaggggtcaa |
28714037 |
T |
|
| Q |
370 |
atcagacatcacaagcaaaatattagatgctgacacggacacacatgcttgcaagctgcaagcattgctggtattagacattatgtgatggttgtgattc |
469 |
Q |
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|||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28714036 |
atcagacatcgcaagcaa--tattagatgctgacactgacacacatgcttgcaagctgcaagcattgctggtattagacattatgtgatggttgtgattc |
28713939 |
T |
|
| Q |
470 |
tccatagaatctcatccatttttatgcctaactttttcaacatcaacctctgaactcaaacgatgattaggaagtgatcagtgtctgacaatggcacgac |
569 |
Q |
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| T |
28713938 |
tccatagaatctcatccatttttatgcctaactttttcaacatcaacctctgaactcaaacaatgattaggaagtgatcagtgtctgacaatggcacgac |
28713839 |
T |
|
| Q |
570 |
gccgagacatgtggttacatgcatttttattccattttctcaaattattatcggtgttgacagtgcttgtatgtgtgttagtgctctgtagattttaaca |
669 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28713838 |
gccgagacatgtggttacatgcatttttattccattttctcaaattattatcggtgttgacagtgcctgtatgtgtgttagtgctctgtagattttaaca |
28713739 |
T |
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| Q |
670 |
ttaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
719 |
Q |
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| T |
28713738 |
ttaatagattcttttctcggaagttatcatcgcgatgaattcatgcaatt |
28713689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 751 - 973
Target Start/End: Complemental strand, 28713657 - 28713430
Alignment:
| Q |
751 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagcca |
850 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
28713657 |
tggcaatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagctggcctagcca |
28713558 |
T |
|
| Q |
851 |
tgaatgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaat-cctgaaattaatggtg-ttcctgtccacaaaatttca- |
947 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
28713557 |
tgaatgcttgccaagtctggatactatatcttgcggcataagctgcagcagccacagcaatccctgaaattaatggtgtttcctgtccacaaaatttcaa |
28713458 |
T |
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| Q |
948 |
-attagtt-cacaaaaacaaaaataatt |
973 |
Q |
| |
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|| |||| ||||||||||||||||||| |
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| T |
28713457 |
tatcagttccacaaaaacaaaaataatt |
28713430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 28714413 - 28714371
Alignment:
| Q |
9 |
gtgtgagtgttttaaactcgggtacctagttcgatctctactc |
51 |
Q |
| |
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| T |
28714413 |
gtgtgagtgttttaaactcgggtacctagttcaatctctactc |
28714371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 755 - 913
Target Start/End: Original strand, 48904681 - 48904839
Alignment:
| Q |
755 |
aatacctaacaccaagaatgcgagctgcttccctcttatccatgatagctttgaaaccaccttcataaaatttacgcatcccagatggtctagccatgaa |
854 |
Q |
| |
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|||||||||||||||| ||| |||||||||||||||| ||| ||| | ||||||||||||||||||||||||| ||| ||||||||| |||| |
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| T |
48904681 |
aatacctaacaccaagtatgagagctgcttccctcttcgtcatagtaggctgaaaaccaccttcataaaatttacgcaatgcaggtggtctagctttgaa |
48904780 |
T |
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| Q |
855 |
tgcttgccaagcctggatactatatcttgcggcataagctgcagcagccacagcaatcc |
913 |
Q |
| |
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|||||||||||||||||||| |||| | ||||||| |||||||||||||||||||||| |
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|
| T |
48904781 |
tgcttgccaagcctggataccatatttaccggcatatgctgcagcagccacagcaatcc |
48904839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 633
Target Start/End: Complemental strand, 18570997 - 18570966
Alignment:
| Q |
602 |
cattttctcaaattattatcggtgttgacagt |
633 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
18570997 |
cattttctcaaattattatcggtgttgacagt |
18570966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 602 - 631
Target Start/End: Original strand, 18919056 - 18919085
Alignment:
| Q |
602 |
cattttctcaaattattatcggtgttgaca |
631 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
18919056 |
cattttctcaaattattatcggtgttgaca |
18919085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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