View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3398R-Insertion-3 (Length: 948)

Name: NF3398R-Insertion-3
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3398R-Insertion-3
NF3398R-Insertion-3
[»] chr5 (9 HSPs)
chr5 (220-609)||(29568914-29569304)
chr5 (719-858)||(29568681-29568821)
chr5 (17-141)||(29569304-29569428)
chr5 (268-455)||(27918172-27918362)
chr5 (127-249)||(27917980-27918103)
chr5 (734-855)||(29569992-29570110)
chr5 (481-606)||(1757581-1757698)
chr5 (517-577)||(27918399-27918461)
chr5 (690-720)||(29568835-29568865)
[»] chr4 (4 HSPs)
chr4 (481-609)||(27481553-27481675)
chr4 (484-592)||(27461533-27461635)
chr4 (542-609)||(27521753-27521820)
chr4 (392-430)||(27481496-27481534)


Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 220 - 609
Target Start/End: Complemental strand, 29569304 - 29568914
Alignment:
Q  220 ttcgcgttaaaattgggacgagttcgaccaaatacctacttnnnnnnntgctaaatctgaacattaattttttacttctaccgtacaattcttcacttga 319  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  29569304 ttcgcgttaaaattgggacgagttcgaccaaatacctacttaaaaaaatgctaaatctgaacattaattttttacttctaccgtacaattctgtacttga 29569205  T
Q  320 actaatattatgatatatatgatgaagagtgagctcaattcttgatatcctaagaagacactttcacaaagatgttttgtatgaatgttccgagttgtga 419  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29569204 actaatattatgatatatatgatgaagagtgaggtcaattcttgatatcctaagaagacactttcacaaagatgttttgtatgaatgttccgagttgtga 29569105  T
Q  420 gatggtaaaaaatttcaatagccttgttcaatgtccgtgtccttttaacatcaa-ttagagttgtggacagaaggggcaaaaagattcatgacctgctag 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||    
T  29569104 gatggtaaaaaatttcaatagccttgttcaatgtccgtgtccttttaacatcaatttagagttgtggacagaaggggcaaaaagattcatgaccagccag 29569005  T
Q  519 aatccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttcttttaaacattttgattggattttgaggacag 609  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29569004 aatccattttggttcaagttgtatatctctcaaatacaaagcatgtaaaatttcttttcttttaaacattttgattggattttgaggacag 29568914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 719 - 858
Target Start/End: Complemental strand, 29568821 - 29568681
Alignment:
Q  719 atgtgtaactgtaaacaaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcgtatcctctaaagtt 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  29568821 atgtgtaactgtaaacaaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcatatcctctaaagtt 29568722  T
Q  819 caacatttttataactttg-cactcacacttactttacaac 858  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  29568721 caacatttttataactttgccactcacacttactttacaac 29568681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 29569428 - 29569304
Alignment:
Q  17 ctaaactgacattatgcaatgcagactgaaaaatttaaagagtatttttagatggttgtgaggaatactgatcattatacgaaagttttgcatattctaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  29569428 ctaaactgacattatgcaatgcagactgaaaaatttaaagagtatttttagatggttgtgaggaataccgatcattatacgaaagtttcacatattctaa 29569329  T
Q  117 acaactgtcatcaaaacaaaggagt 141  Q
    |||||||||||||||||||||||||    
T  29569328 acaactgtcatcaaaacaaaggagt 29569304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 268 - 455
Target Start/End: Original strand, 27918172 - 27918362
Alignment:
Q  268 tgctaaatctgaacattaattttttacttctaccgtacaattcttcacttgaactaatattatgatatatatgatgaagagtgagctcaattcttgatat 367  Q
    |||||| |||||||||| |||||||||||||||||||||| |||| |||  ||  |||||| |||||||||||||||||| |||  |||| |||||||||    
T  27918172 tgctaattctgaacattgattttttacttctaccgtacaagtcttgactgaaataaatattgtgatatatatgatgaagactgacgtcaaatcttgatat 27918271  T
Q  368 cctaagaagacactttcacaaagatgttttgtatgaatgttccgagttgtgagatggtaaaaa---atttcaatagccttgttcaatgtcc 455  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    ||||||||||||||||||||||||    
T  27918272 cctaagaagacactttcacaaagatgttttgtatgaatgttccaagttgtgatgtggtaaaaatatctttcaatagccttgttcaatgtcc 27918362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 127 - 249
Target Start/End: Original strand, 27917980 - 27918103
Alignment:
Q  127 tcaaaacaaaggagtgatgtctcttgtttataaattcatttt-aacttttattttatcaaatgtgaaactcttataaaatttgttaaagtggatttcgcg 225  Q
    ||||||||||||||||||||| ||| |||||||||||||||| || |||||| |||||||||||||||||||||  |||||||||||||||||||||| |    
T  27917980 tcaaaacaaaggagtgatgtcacttatttataaattcattttcaagttttatcttatcaaatgtgaaactcttaacaaatttgttaaagtggatttcggg 27918079  T
Q  226 ttaaaattgggacgagttcgacca 249  Q
    |||||||||  | |||||||||||    
T  27918080 ttaaaattgaaatgagttcgacca 27918103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 734 - 855
Target Start/End: Complemental strand, 29570110 - 29569992
Alignment:
Q  734 caaacaaactctcccaagtcccaaccaacctcccaaaatcagttacacttgaaaacctcaacaaatcttcgtatcctctaaagttcaacatttttataac 833  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||    |||||||||||||||||| ||||||||||||||||| |  ||||||||    
T  29570110 caaacaaactctcccaagtcccaaccaacttaccaaaatcagttacac----aaacctcaacaaatcttcatatcctctaaagttcaaaaaatttataac 29570015  T
Q  834 tttg-cactcacacttactttac 855  Q
    |||| |||||||||| |||||||    
T  29570014 tttgccactcacactaactttac 29569992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 481 - 606
Target Start/End: Original strand, 1757581 - 1757698
Alignment:
Q  481 tgtggacagaaggggcaaaaagattcatgacctgctagaatccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttcttt 580  Q
    |||||||||||||||||||||   |||||||| || ||||||||||||| ||       | ||||||||||| |||||| |||||||| ||||||||||     
T  1757581 tgtggacagaaggggcaaaaaatgtcatgaccagccagaatccattttgatt-------tgtatctctcaaa-acaaattatgtaaaacttcttttcttc 1757672  T
Q  581 taaacattttgattggattttgagga 606  Q
    ||||||||||||||||||||||||||    
T  1757673 taaacattttgattggattttgagga 1757698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 517 - 577
Target Start/End: Original strand, 27918399 - 27918461
Alignment:
Q  517 agaatccattttggttcaagttgtatatctctc--aaatacaaatcatgtaaaatttcttttc 577  Q
    ||||||||||| |||||||||||||| |||| |  ||||||||||||||||||| ||||||||    
T  27918399 agaatccatttaggttcaagttgtatctctcacttaaatacaaatcatgtaaaacttcttttc 27918461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 690 - 720
Target Start/End: Complemental strand, 29568865 - 29568835
Alignment:
Q  690 gagattgatgtgattatttggttgagcttat 720  Q
    |||||||||||||||||||||||||||||||    
T  29568865 gagattgatgtgattatttggttgagcttat 29568835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 481 - 609
Target Start/End: Original strand, 27481553 - 27481675
Alignment:
Q  481 tgtggacagaaggggcaaaaagattcatgacctgctagaa-tccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttctt 579  Q
    |||||||||||||||||||||   |||||||| || |||| ||||||||||||       | |||||||||||||||||| |||||||| |||||||| |    
T  27481553 tgtggacagaaggggcaaaaattgtcatgaccagccagaaatccattttggtt-------tgtatctctcaaatacaaattatgtaaaacttcttttcct 27481645  T
Q  580 ttaaacattttgattggattttgaggacag 609  Q
    ||||||||||||||| |||||| |||||||    
T  27481646 ttaaacattttgattagattttaaggacag 27481675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 484 - 592
Target Start/End: Original strand, 27461533 - 27461635
Alignment:
Q  484 ggacagaaggggcaaaaagattcatgacctgctagaa-tccattttggttcaagttgtatatctctcaaatacaaatcatgtaaaatttcttttctttta 582  Q
    ||||||||||||||||||   |||||||| ||||||| ||||||||||||       | |||||||||||||||||| |||||||| |||||||||||||    
T  27461533 ggacagaaggggcaaaaaatgtcatgaccagctagaaatccattttggtt-------tgtatctctcaaatacaaattatgtaaaacttcttttctttta 27461625  T
Q  583 aacattttga 592  Q
    ||||||||||    
T  27461626 aacattttga 27461635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 542 - 609
Target Start/End: Complemental strand, 27521820 - 27521753
Alignment:
Q  542 tatctctcaaatacaaatcatgtaaaatttcttttcttttaaacattttgattggattttgaggacag 609  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||||||| |||||||| |||||    
T  27521820 tatctctcaaatacaaattatgtaaaacttattttcttttaaacattttgatttgattttgaagacag 27521753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 392 - 430
Target Start/End: Original strand, 27481496 - 27481534
Alignment:
Q  392 tgttttgtatgaatgttccgagttgtgagatggtaaaaa 430  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  27481496 tgttttgtatgaatgttccgagttgtgaagtggtaaaaa 27481534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University