View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398R-Insertion-6 (Length: 516)
Name: NF3398R-Insertion-6
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398R-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 328 - 516
Target Start/End: Complemental strand, 219356 - 219169
Alignment:
| Q |
328 |
aacatttatcactctccttgctaaaagctcaactcagctaagttaagctagggttttcttttcctcatacattgattgatcttcatctttgctctgtctt |
427 |
Q |
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| T |
219356 |
aacatttatcactctccttgctaaa-gctcaactcagctaagttaagctagggttttcttttcctcatacattgattgatcttcatctttgctctgtctt |
219258 |
T |
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| Q |
428 |
atttaaggtatgtttctcattttattcatccttttgcattttctctttaaattgatttacttttgtacaacttcaatgcatgcaacccg |
516 |
Q |
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| T |
219257 |
atttaaggtatgtttctcattttattcatccttttgcattttctctttaaattgatttacttttgtacaacttcaatgcatgcaacccg |
219169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 219667 - 219446
Alignment:
| Q |
9 |
gaaaagagattaggctttactagtagtaagattgaatttagaaagagaaaatcaaaacaagttttaagcgcggcattctgacaatattccttcctctgac |
108 |
Q |
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| T |
219667 |
gaaaagagattaggctttactagtagtaagattgaatttagaaagagaaaatcaaaacaagttttaagcgcggcattctgacaatattccttcctctgac |
219568 |
T |
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| Q |
109 |
gtacgacgacactgtcgtctctactctttctgttcannnnnnnnnnnnnnnnnntcataggctttcgtgttccttttccatcccattaattacattaatg |
208 |
Q |
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| T |
219567 |
gtacgacgacactgtcttctctactctttctgttcactctctctctctctctcttcataggctttcgtgttccttttccatcccattaattacattaatg |
219468 |
T |
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| Q |
209 |
ctaataaacgcatttactacca |
230 |
Q |
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| T |
219467 |
ctaataaacgcatttactacca |
219446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 219400 - 219367
Alignment:
| Q |
276 |
attgggaaatgatatttcaaacaaataacataga |
309 |
Q |
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| T |
219400 |
attgggaaatgatatttcaaacaaatcacataga |
219367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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