View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3398R-Insertion-7 (Length: 411)

Name: NF3398R-Insertion-7
Description: NF3398R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3398R-Insertion-7
NF3398R-Insertion-7
[»] chr8 (2 HSPs)
chr8 (195-411)||(29273593-29273809)
chr8 (9-163)||(29273407-29273561)
[»] chr1 (5 HSPs)
chr1 (198-411)||(268170-268383)
chr1 (9-89)||(267909-267989)
chr1 (215-391)||(28127509-28127685)
chr1 (84-163)||(268056-268135)
chr1 (215-386)||(28164193-28164364)
[»] chr4 (12 HSPs)
chr4 (198-411)||(18699213-18699426)
chr4 (198-411)||(18655290-18655503)
chr4 (198-391)||(18731317-18731510)
chr4 (198-391)||(18723898-18724091)
chr4 (198-391)||(18679380-18679573)
chr4 (9-62)||(18679125-18679178)
chr4 (9-74)||(18074309-18074374)
chr4 (9-62)||(18698965-18699018)
chr4 (10-62)||(18655043-18655095)
chr4 (10-62)||(18723651-18723703)
chr4 (10-62)||(18731070-18731122)
chr4 (87-162)||(18731207-18731281)
[»] chr6 (44 HSPs)
chr6 (201-411)||(26646627-26646837)
chr6 (201-411)||(26752595-26752805)
chr6 (224-397)||(25579881-25580054)
chr6 (224-397)||(26056088-26056261)
chr6 (224-397)||(26076058-26076231)
chr6 (224-400)||(26143024-26143200)
chr6 (224-391)||(26656157-26656324)
chr6 (224-391)||(26762128-26762295)
chr6 (199-295)||(28786542-28786638)
chr6 (200-391)||(27337893-27338084)
chr6 (200-391)||(27398633-27398824)
chr6 (224-397)||(25538702-25538875)
chr6 (199-295)||(28781403-28781499)
chr6 (215-295)||(28792663-28792743)
chr6 (342-411)||(26623124-26623193)
chr6 (342-411)||(26729102-26729171)
chr6 (224-349)||(25481952-25482077)
chr6 (9-74)||(28786786-28786851)
chr6 (235-391)||(26824008-26824164)
chr6 (9-74)||(26802994-26803059)
chr6 (9-74)||(27427181-27427246)
chr6 (9-74)||(27718068-27718133)
chr6 (9-74)||(28781649-28781714)
chr6 (9-74)||(27610689-27610754)
chr6 (9-74)||(28792907-28792972)
chr6 (326-382)||(26049022-26049078)
chr6 (326-382)||(26070191-26070247)
chr6 (9-73)||(27592590-27592654)
chr6 (9-73)||(27677189-27677253)
chr6 (9-73)||(27679499-27679563)
chr6 (9-73)||(27705973-27706037)
chr6 (15-74)||(27530876-27530935)
chr6 (229-322)||(26949898-26949991)
chr6 (9-74)||(27698155-27698220)
chr6 (28-72)||(25539093-25539137)
chr6 (28-62)||(26143428-26143462)
chr6 (16-74)||(27604280-27604338)
chr6 (236-349)||(25506848-25506961)
chr6 (15-56)||(26647045-26647086)
chr6 (15-56)||(26753013-26753054)
chr6 (229-310)||(26959415-26959496)
chr6 (28-72)||(25483609-25483653)
chr6 (28-72)||(25580272-25580316)
chr6 (15-71)||(26884621-26884677)
[»] scaffold0419 (2 HSPs)
scaffold0419 (199-301)||(7783-7885)
scaffold0419 (9-74)||(8035-8100)
[»] scaffold0277 (4 HSPs)
scaffold0277 (199-301)||(4498-4600)
scaffold0277 (199-301)||(13459-13561)
scaffold0277 (9-74)||(13244-13309)
scaffold0277 (13-74)||(4285-4346)
[»] scaffold0349 (2 HSPs)
scaffold0349 (9-74)||(3108-3173)
scaffold0349 (230-298)||(3278-3346)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-74)||(60117-60182)
[»] chr2 (1 HSPs)
chr2 (229-322)||(17993541-17993634)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 195 - 411
Target Start/End: Original strand, 29273593 - 29273809
Alignment:
Q  195 caggaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgt 294  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  29273593 caggaattaagtaaagagcagtacccatgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgatccatgt 29273692  T
Q  295 ttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagac 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273693 ttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagac 29273792  T
Q  395 gggaaaaatgagacgac 411  Q
     || |||||||||||||    
T  29273793 aggcaaaatgagacgac 29273809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 9 - 163
Target Start/End: Original strand, 29273407 - 29273561
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagtaatagtatgtaacaactaatacttatttagaaatg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29273407 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagtaatagtatgtaacaactaatacttatttagaaacg 29273506  T
Q  109 taaataaaaacggttttatccatttatgatttaagatggtattattgaggaatag 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273507 taaataaaaacggttttatccatttatgatttaagatggtattattgaggaatag 29273561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 198 - 411
Target Start/End: Original strand, 268170 - 268383
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  268170 gaattaagtaaagagcagtacccacgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttt 268269  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  268270 tcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 268369  T
Q  398 aaaaatgagacgac 411  Q
     |||||||||||||    
T  268370 caaaatgagacgac 268383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 267909 - 267989
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagtaatagtatgtaacaac 89  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  267909 gtatttgactatctctccaataaacttgtattcatatctattcatgtcaaataatgcaagttagtaatagtatgtaacaac 267989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 391
Target Start/End: Original strand, 28127509 - 28127685
Alignment:
Q  215 gtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaa 314  Q
    |||||| | |||| |||||||||| |||||||||| ||||||||| ||||| | ||||||||| ||||| || ||||||||||||||| ||||||||||     
T  28127509 gtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaac 28127608  T
Q  315 ctctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    |||||| | | |||||  || | |||||||||||||||  | |||| ||| |  | |||||||||||||||| ||||    
T  28127609 ctctctccatgcttagcaagctcttcaccataactccctgtatgatatcgcacatcagtaggatccacgccaaagaa 28127685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 268056 - 268135
Alignment:
Q  84 aacaactaatacttatttagaaatgtaaataaaaacggttttatccatttatgatttaagatggtattattgaggaatag 163  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||    
T  268056 aacaactaatacttatttagaaacgtaaataaaaaaggttttagccatttatggtttaagatggtattatcgaggaatag 268135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 386
Target Start/End: Original strand, 28164193 - 28164364
Alignment:
Q  215 gtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaa 314  Q
    |||||| | |||| |||||||||| |||||||||| ||||||||| ||||| | ||||||||| ||||| || ||||||||||||||| ||||||||||     
T  28164193 gtaccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaac 28164292  T
Q  315 ctctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgcca 386  Q
    |||||  | | |||||| |||| ||  |||||||||||  | |||||||| |  | ||||||||||||||||    
T  28164293 ctctcaccatgcttagtaagatctttgccataactccctgtatgatgtcgcacatcagtaggatccacgcca 28164364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 198 - 411
Target Start/End: Original strand, 18699213 - 18699426
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  18699213 gaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttt 18699312  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    ||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||    
T  18699313 tcttgttattttggaaactctttccgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatctacgccatagaaaacagg 18699412  T
Q  398 aaaaatgagacgac 411  Q
     |||| ||||||||    
T  18699413 caaaacgagacgac 18699426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 198 - 411
Target Start/End: Original strand, 18655290 - 18655503
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||| ||||| ||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  18655290 gaattaagtgaagaggagtacccaggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18655389  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    ||||| ||||||||||| ||| |  || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||    
T  18655390 tcttgttattttggaaattctttctgtgcttagtgagatgttcaccataacttccagtttgatgtcgtatgtgagtaggatccacgccatagaaaacagg 18655489  T
Q  398 aaaaatgagacgac 411  Q
    ||||| ||||||||    
T  18655490 aaaaacgagacgac 18655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 18731317 - 18731510
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||||||||| ||||||||  |||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  18731317 gaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18731416  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    ||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18731417 tcttgttattttggaaactctttttgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgactaggatccacgccatagaa 18731510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 18723898 - 18724091
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  18723898 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18723997  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    ||||| ||||||||||||||  || || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  18723998 tcttgttattttggaaactcattttgtgcttagtgagatgttcaccataactcccactttggtgtcgtatgtgactaggatccacgccatagaa 18724091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 198 - 391
Target Start/End: Original strand, 18679380 - 18679573
Alignment:
Q  198 gaattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttt 297  Q
    ||||||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  18679380 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttt 18679479  T
Q  298 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    | ||| ||||||||||||||| |  ||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||    
T  18679480 tattgttattttggaaactctttcagtgattagtgagatgttcaccataactaccactttgatgtcatatgtgagtaggatccacgacatagaa 18679573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 18679125 - 18679178
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataa 62  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  18679125 gtatttgactatctctccaataaacttgtattcatatctattcatgtccaataa 18679178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 18074374 - 18074309
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||| ||| |||| || ||||||||||||||||||||| ||||||| |||||||||    
T  18074374 gtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagta 18074309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 18698965 - 18699018
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataa 62  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  18698965 gtatttgactatatctccaataaacttgtattcatatctattcatgtccaataa 18699018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 18655043 - 18655095
Alignment:
Q  10 tatttgactatctctccgataaacttgtattcatatctattcatgtcaaataa 62  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  18655043 tatttgactatctttccaataaacttgtattcatatctattcatgtccaataa 18655095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 18723651 - 18723703
Alignment:
Q  10 tatttgactatctctccgataaacttgtattcatatctattcatgtcaaataa 62  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  18723651 tatttgactatctttccaataaacttgtattcatatctattcatgtccaataa 18723703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 18731070 - 18731122
Alignment:
Q  10 tatttgactatctctccgataaacttgtattcatatctattcatgtcaaataa 62  Q
    ||||||||||||| | | ||||||||||||||||||||||||||||| |||||    
T  18731070 tatttgactatcttttcaataaacttgtattcatatctattcatgtccaataa 18731122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 18731207 - 18731281
Alignment:
Q  87 aactaatacttatttagaaatgtaaataaaaacggttttatccatttatgatttaagatggtattattgaggaata 162  Q
    ||||||||||| |||| ||||||||| ||||| ||| ||  | ||||| | |||||||||||||||||||||||||    
T  18731207 aactaatacttgtttaaaaatgtaaaaaaaaa-ggtgtttccaatttaggctttaagatggtattattgaggaata 18731281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 44)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 411
Target Start/End: Complemental strand, 26646837 - 26646627
Alignment:
Q  201 ttaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttct 300  Q
    |||||||||| |  |||||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26646837 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttct 26646738  T
Q  301 tgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggaaa 400  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||    
T  26646737 tgttattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaacgggcaa 26646638  T
Q  401 aatgagacgac 411  Q
    || ||||||||    
T  26646637 aacgagacgac 26646627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 201 - 411
Target Start/End: Complemental strand, 26752805 - 26752595
Alignment:
Q  201 ttaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttct 300  Q
    |||||||||| |  |||||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26752805 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttct 26752706  T
Q  301 tgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggaaa 400  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||    
T  26752705 tgttattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatccacgccatagaaaacgggcaa 26752606  T
Q  401 aatgagacgac 411  Q
    || ||||||||    
T  26752605 aacgagacgac 26752595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 397
Target Start/End: Complemental strand, 25580054 - 25579881
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| |||||||||| ||||||||| ||||| | |||||||||| |||| || ||||||||||||| | ||||||| || ||||||||     
T  25580054 actataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttca 25579955  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    | |||||| ||||  ||||||||||||||||| |||||||||||||||||||| |||||  ||||||| |||||    
T  25579954 tgcttagtaagatactcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacggg 25579881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 397
Target Start/End: Complemental strand, 26056261 - 26056088
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| |||||||||| |||||| || ||||||| |||||||||| |||| || ||||||||||||| | |||||||||| | |||||      
T  26056261 actataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctcttta 26056162  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    | |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||  ||||||| |||||    
T  26056161 tgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacggg 26056088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 224 - 397
Target Start/End: Complemental strand, 26076231 - 26076058
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| |||||||||| |||||| || ||||||| |||||||||| |||| || ||||||||||||| | |||||||||| | |||||      
T  26076231 actataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctcttta 26076132  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    | |||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||  ||||||| |||||    
T  26076131 tgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtaggttccacatcatagaaaacggg 26076058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 224 - 400
Target Start/End: Complemental strand, 26143200 - 26143024
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| |||||||||| ||||||| | ||||| | |||||||||| |||| || ||||||||||||| | ||||||| || ||||||||     
T  26143200 actataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctcttca 26143101  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggaaa 400  Q
    | |||||| ||||| ||||||||| ||||||| |||| ||||||||||||||| |||||  ||||||| ||||||||    
T  26143100 tgcttagtaagatgctcaccataaatcccactctgatttcgtatgtgagtaggttccacatcatagaaaacgggaaa 26143024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 26656324 - 26656157
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||  | |||||||| |||| ||||||||||  ||| |||     
T  26656324 actacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttca 26656225  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    | |||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||||||    
T  26656224 tgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaa 26656157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 224 - 391
Target Start/End: Complemental strand, 26762295 - 26762128
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||  | |||||||| |||| ||||||||||  ||| |||     
T  26762295 actacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttca 26762196  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    | |||||| ||||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||||||    
T  26762195 tgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatccacaccatagaa 26762128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 28786638 - 28786542
Alignment:
Q  199 aattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtt 295  Q
    ||||||||||| ||  |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  28786638 aattaagtaaatagtcgtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28786542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 200 - 391
Target Start/End: Original strand, 27337893 - 27338084
Alignment:
Q  200 attaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttc 299  Q
    ||||||||||| |  ||||||   |||| |||||| ||| || ||||||| ||||||||| ||||||| ||||||||  | |||||  |||||||||| |    
T  27337893 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttcc 27337992  T
Q  300 ttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    ||| ||||||||||  | ||||| | |||||| ||||| ||||||||||||||| | |||||||||| ||||||||||||| | ||||||||    
T  27337993 ttgttattttggaacttatcttcatgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaa 27338084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 200 - 391
Target Start/End: Original strand, 27398633 - 27398824
Alignment:
Q  200 attaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttc 299  Q
    ||||||||||| |  ||||||   |||| |||||| ||| || ||||||| ||||||||| ||||||| ||||||||  | |||||  |||||||||| |    
T  27398633 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttcc 27398732  T
Q  300 ttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    ||| ||||||||||  | ||||| | |||||| ||||| ||||||||||||||| | |||||||||| ||||||||||||| | ||||||||    
T  27398733 ttgttattttggaacttatcttcatgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatccgcaccatagaa 27398824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 397
Target Start/End: Complemental strand, 25538875 - 25538702
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| |||||||||| ||||||| | ||||| | |||||||||| |||| || |||||||||||||   ||||||| || ||||||||     
T  25538875 actataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctcttca 25538776  T
Q  324 tacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacggg 397  Q
    | |||||| | ||| ||||||||||||||||| ||||||||||  |||||||| |||||  ||||||| |||||    
T  25538775 tgcttagtaaaatgctcaccataactcccactctgatgtcgtaactgagtaggttccacatcatagaaaacggg 25538702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 199 - 295
Target Start/End: Complemental strand, 28781499 - 28781403
Alignment:
Q  199 aattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtt 295  Q
    |||||||||||  |  |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  28781499 aattaagtaaattgtcgtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28781403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 28792743 - 28792663
Alignment:
Q  215 gtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtt 295  Q
    |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28792663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 26623193 - 26623124
Alignment:
Q  342 ccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggaaaaatgagacgac 411  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  26623193 ccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgac 26623124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 26729171 - 26729102
Alignment:
Q  342 ccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaagacgggaaaaatgagacgac 411  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  26729171 ccataactcccagtttgatgccgtatgtgagtaggatccacgccatagaagacgggcaaaacgagacgac 26729102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 349
Target Start/End: Complemental strand, 25482077 - 25481952
Alignment:
Q  224 actagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcg 323  Q
    |||| |||| ||||| ||||| |||| |||||| || ||||||| |||||||||| |||| || ||||||||||||| | |||||||||| | ||||||     
T  25482077 actataatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctcttca 25481978  T
Q  324 tacttagtgagatgttcaccataact 349  Q
    | |||||| |||| ||||||||||||    
T  25481977 tgcttagtcagatattcaccataact 25481952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 28786851 - 28786786
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| |||| | |||||||||    
T  28786851 gtatttgactatatctccaataaacttgtattcatatctattcatgtcatataagataagttagta 28786786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 391
Target Start/End: Complemental strand, 26824164 - 26824008
Alignment:
Q  235 agccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcgtacttagtgag 334  Q
    |||||||||||| || ||||||  ||||||||  |||||||||| ||||    |||||||||| |||| |||||  ||| |||| ||| | |||||||||    
T  26824164 agccagacaagtcagcagcttgtttcagagccttcttccattgaagcaatttctccatgttttccttgttatttccgaacctcttttcatgcttagtgag 26824065  T
Q  335 atgttcaccataactcccactttgatgtcgtatgtgagtaggatccacgccatagaa 391  Q
    ||||  | ||||||||||||  ||||||||||||| |  ||||||||| ||||||||    
T  26824064 atgtatagcataactcccacgctgatgtcgtatgtcaccaggatccacaccatagaa 26824008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 26803059 - 26802994
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||||||| || |||||||||||||||||||||||||| || || | |||||||||    
T  26803059 gtatttgactatctctccaatcaacttgtattcatatctattcatgtccaacaagataagttagta 26802994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 27427181 - 27427246
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||| ||| |||| || ||||||||||||||||||||| ||||||| |||||||||    
T  27427181 gtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagta 27427246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 27718068 - 27718133
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| | ||| | |||||||||    
T  27718068 gtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagta 27718133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 28781714 - 28781649
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| |||| | |||||||||    
T  28781714 gtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagta 28781649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 27610689 - 27610754
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||| | ||||| | |||||||||    
T  27610689 gtatttgactatctctccagtaaactcgtattcatatctattcatgcccaataagataagttagta 27610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 28792972 - 28792907
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||| ||||| ||||||||||||||||||||||| |||||  |||| | |||||||||    
T  28792972 gtatttgactatatctccaataaacttgtattcatatctattaatgtccgataagataagttagta 28792907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 26049078 - 26049022
Alignment:
Q  326 cttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccac 382  Q
    |||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||    
T  26049078 cttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtaggttccac 26049022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 26070247 - 26070191
Alignment:
Q  326 cttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatccac 382  Q
    |||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||    
T  26070247 cttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtaggttccac 26070191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27592590 - 27592654
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagt 73  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||  ||||| | ||||||||    
T  27592590 gtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagt 27592654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27677189 - 27677253
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagt 73  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||  ||||| | ||||||||    
T  27677189 gtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagt 27677253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 27679563 - 27679499
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagt 73  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||  ||||| | ||||||||    
T  27679563 gtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagt 27679499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 27705973 - 27706037
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagt 73  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||  ||||| | ||||||||    
T  27705973 gtatttgactatctttccaataagcttgtattcatatctattcatgtgcaataagataagttagt 27706037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 27530876 - 27530935
Alignment:
Q  15 gactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||| ||| ||||||| ||||||||||||||||||||| ||||| | |||||||||    
T  27530876 gactatctttccaataaactcgtattcatatctattcatgtccaataagataagttagta 27530935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 322
Target Start/End: Complemental strand, 26949991 - 26949898
Alignment:
Q  229 aatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttc 322  Q
    ||||||||||||| |||| || | ||| | ||||||| | ||||||||   ||||||| ||||||||||| ||||| |||||||| ||||||||    
T  26949991 aatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttc 26949898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 27698155 - 27698220
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||||| | ||||||||||||||||||||| || |||| | ||| | |||||||||    
T  27698155 gtatttgactatctcttcaataaacttgtattcatatctactcgtgtcgagtaagaaaagttagta 27698220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 25539137 - 25539093
Alignment:
Q  28 ataaacttgtattcatatctattcatgtcaaataatacaagttag 72  Q
    ||||||||||||||||||||||||||||| ||||| | |||||||    
T  25539137 ataaacttgtattcatatctattcatgtccaataagataagttag 25539093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 26143462 - 26143428
Alignment:
Q  28 ataaacttgtattcatatctattcatgtcaaataa 62  Q
    ||||||||||||||||||||||||||||| |||||    
T  26143462 ataaacttgtattcatatctattcatgtccaataa 26143428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 27604280 - 27604338
Alignment:
Q  16 actatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    ||||||| ||| |||| || ||||||||||||||||||||| ||||| | |||||||||    
T  27604280 actatctttccaataagctcgtattcatatctattcatgtccaataagataagttagta 27604338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 25506848 - 25506961
Alignment:
Q  236 gccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttcgtacttagtgaga 335  Q
    |||||||| ||||| || ||| || ||||| |  |||||||||||| | |  ||||||||||||||  ||||||| ||  ||||||| | |||||| |||    
T  25506848 gccagacaggttagcagattgtgttagagctattttccattgatgcgatctctccatgtttttcttattattttgaaacttctcttcatgcttagtcaga 25506947  T
Q  336 tgttcaccataact 349  Q
    | ||||||||||||    
T  25506948 tcttcaccataact 25506961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 26647086 - 26647045
Alignment:
Q  15 gactatctctccgataaacttgtattcatatctattcatgtc 56  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  26647086 gactatcttcccaataaacttgtattcatatctattcatgtc 26647045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 26753054 - 26753013
Alignment:
Q  15 gactatctctccgataaacttgtattcatatctattcatgtc 56  Q
    ||||||||  || |||||||||||||||||||||||||||||    
T  26753054 gactatcttcccaataaacttgtattcatatctattcatgtc 26753013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 26959496 - 26959415
Alignment:
Q  229 aatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttg 310  Q
    |||||| |||||| ||||||| ||||||| | |||||   ||||||||   ||||||| |||||||||| ||||||||||||    
T  26959496 aatggtggccagataagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttg 26959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 25483653 - 25483609
Alignment:
Q  28 ataaacttgtattcatatctattcatgtcaaataatacaagttag 72  Q
    |||||||||| |||||||||||||||||| ||||| | |||||||    
T  25483653 ataaacttgtgttcatatctattcatgtccaataagataagttag 25483609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 25580316 - 25580272
Alignment:
Q  28 ataaacttgtattcatatctattcatgtcaaataatacaagttag 72  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||    
T  25580316 ataaacttgtattcatatctattcgtgtccaataagataagttag 25580272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 26884677 - 26884621
Alignment:
Q  15 gactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagtta 71  Q
    ||||||||  |||||||||| |||||| |||||||||||||| ||||| | ||||||    
T  26884677 gactatcttcccgataaactcgtattcgtatctattcatgtccaataagataagtta 26884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 7885 - 7783
Alignment:
Q  199 aattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgttttt 298  Q
    ||||||||||| ||  |||||||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||    
T  7885 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttatt 7786  T
Q  299 ctt 301  Q
    |||    
T  7785 ctt 7783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 8100 - 8035
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| |||| | |||||||||    
T  8100 gtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagta 8035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 4498 - 4600
Alignment:
Q  199 aattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgttttt 298  Q
    ||||||||||| ||  |||||||  ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||  |||||||| ||    
T  4498 aattaagtaaataggcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatt 4597  T
Q  299 ctt 301  Q
    |||    
T  4598 ctt 4600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 13459 - 13561
Alignment:
Q  199 aattaagtaaagagcagtacccagtactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgttttt 298  Q
    ||||||||||| ||  |||||||  ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| || |||||||| ||    
T  13459 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttatt 13558  T
Q  299 ctt 301  Q
    |||    
T  13559 ctt 13561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 13244 - 13309
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||| || || |||||||||||||||||||||||||||||| |||| | |||||||||    
T  13244 gtatttgactatatcgccaataaacttgtattcatatctattcatgtcatataagataagttagta 13309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 4285 - 4346
Alignment:
Q  13 ttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||| ||||||||||||||||||||||| |||||  |||| | |||||||||    
T  4285 ttgactatctctccaataaacttgtattcatatctattaatgtccgataagataagttagta 4346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 3108 - 3173
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||| | ||| | |||||||||    
T  3108 gtatttgactatctctccaataaactcgtattcatatctattcatgtccagtaagataagttagta 3173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 298
Target Start/End: Original strand, 3278 - 3346
Alignment:
Q  230 atggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgttttt 298  Q
    ||||||||| |||||||||| ||| ||| |||||||||  |||||| | |||||||  |||||||||||    
T  3278 atggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgttttt 3346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 60182 - 60117
Alignment:
Q  9 gtatttgactatctctccgataaacttgtattcatatctattcatgtcaaataatacaagttagta 74  Q
    |||||||||||||| ||| |||| || ||||||||||||||||||||| ||||||| |||||||||    
T  60182 gtatttgactatctttccaataagctcgtattcatatctattcatgtccaataatataagttagta 60117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 17993541 - 17993634
Alignment:
Q  229 aatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgttccatgtttttcttgctattttggaaactctcttc 322  Q
    |||||| |||||| ||||||| ||||||| | |||||   ||||||||    |||||| |||||||||| |||||||||||| |||| ||||||    
T  17993541 aatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttc 17993634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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