View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398_low_1 (Length: 540)
Name: NF3398_low_1
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 205
Target Start/End: Original strand, 219163 - 219356
Alignment:
| Q |
11 |
caaaggcgggttgcatgcattgaagttgtacaaaagtaaatcaatttaaagagaaaatgcaaaaggatgaataaaatgagaaacataccttaaataagac |
110 |
Q |
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| T |
219163 |
caaaggcgggttgcatgcattgaagttgtacaaaagtaaatcaatttaaagagaaaatgcaaaaggatgaataaaatgagaaacataccttaaataagac |
219262 |
T |
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| Q |
111 |
agagcaaagatgaagatcaatcaatgtatgaggaaaagaaaaccctagcttaacttagctgagttgagcttttagcaaggagagtgataaatgtt |
205 |
Q |
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| T |
219263 |
agagcaaagatgaagatcaatcaatgtatgaggaaaagaaaaccctagcttaacttagctgagttgagc-tttagcaaggagagtgataaatgtt |
219356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 303 - 524
Target Start/End: Original strand, 219446 - 219667
Alignment:
| Q |
303 |
tggtagtaaatgcgtttattagcattaatgtaattaatgggatggaaaaggaacacgaaagcctatgannnnnnnnnnnnnnnnnntgaacagaaagagt |
402 |
Q |
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| T |
219446 |
tggtagtaaatgcgtttattagcattaatgtaattaatgggatggaaaaggaacacgaaagcctatgaagagagagagagagagagtgaacagaaagagt |
219545 |
T |
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| Q |
403 |
agagacgacagtgtcgtcgtacgtcagaggaaggaatattgtcagaatgccgcgcttaaaacttgttttgattttctctttctaaattcaatcttactac |
502 |
Q |
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| T |
219546 |
agagaagacagtgtcgtcgtacgtcagaggaaggaatattgtcagaatgccgcgcttaaaacttgttttgattttctctttctaaattcaatcttactac |
219645 |
T |
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| Q |
503 |
tagtaaagcctaatctcttttc |
524 |
Q |
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| T |
219646 |
tagtaaagcctaatctcttttc |
219667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 257
Target Start/End: Original strand, 219367 - 219400
Alignment:
| Q |
224 |
tctatgttatttgtttgaaatatcatttcccaat |
257 |
Q |
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| T |
219367 |
tctatgtgatttgtttgaaatatcatttcccaat |
219400 |
T |
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