View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3398_low_2 (Length: 527)
Name: NF3398_low_2
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 29357767 - 29358265
Alignment:
| Q |
18 |
aacatccatgttcatgtccaaaacatgttgaccgtgactcccttgtccattctcttcaatcttaggtactggattagccaccattgttgatgctaccatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357767 |
aacatccatgttcatgtccaaaacatgttgaccgtgactcccttgtccattctcttcaatcttaggtactggattagccaccattgttgatgctaccatt |
29357866 |
T |
|
| Q |
118 |
tg------agtttgagtttgaccttgaccttgaccattcctgctcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaaccatgcca |
211 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357867 |
tgagtttgagtttgagtttgaccttgaccttgaccattcctgctcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaaccatgcca |
29357966 |
T |
|
| Q |
212 |
tatcattcaaatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcctttct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357967 |
tatcattcaaatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcctttct |
29358066 |
T |
|
| Q |
312 |
ttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattcaggcatttttcgg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29358067 |
ttgtttagtcaattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattcaggcatttttcgg |
29358166 |
T |
|
| Q |
412 |
aactttgaaagcaccctttggactcctaaaggagatggccaaacctcaggttgaggatcgtatggactatagattatagcacaagcatcaataccacag |
510 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29358167 |
aactttgatagcaccctttggactcctaaaggagatggccaaacctcaggttgaggatcgtatggactatagattatagcacaagcatcaataccacag |
29358265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 221 - 434
Target Start/End: Original strand, 33046128 - 33046341
Alignment:
| Q |
221 |
aatcaaccatgcttatattgtgcataacttgatcagcactaaggtactgaaacattaactgagtcatttctttttctctattatcctttctttgtttagt |
320 |
Q |
| |
|
|||||||||| ||||| |||| ||||| || | | ||||||| || |||||||| | ||||||||||| |||||||||||||| || |||||||| || |
|
|
| T |
33046128 |
aatcaaccatacttatgttgtccataagtttacctgcactaatatattgaaacatgagatgagtcatttccttttctctattatctttcctttgttttgt |
33046227 |
T |
|
| Q |
321 |
caattgatctttcgccttttgaatccgctgcctcaaaaaactctcttggttcaccatctttttgctttgttccaattcaggcatttttcggaactttgaa |
420 |
Q |
| |
|
|||||| |||||||||||||| || | || || | |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
33046228 |
caattgctctttcgccttttggattctttgtcttagaaaactctcttgattcaccatctttttgctttgttccaattcaggcatttttcttaacttgtta |
33046327 |
T |
|
| Q |
421 |
agcaccctttggac |
434 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
33046328 |
aggaccctttggac |
33046341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 33046085 - 33046137
Alignment:
| Q |
155 |
tcaacatttcaaccctcctattgatatctttcaaatactgatcaatcaaccat |
207 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||| || ||||||||||||||| |
|
|
| T |
33046085 |
tcaacatttcaacccttctattaatctctttcaagtattgatcaatcaaccat |
33046137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University