View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398_low_3 (Length: 503)
Name: NF3398_low_3
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Original strand, 49274311 - 49274763
Alignment:
| Q |
19 |
ttaaatgtattgaaacttcaaaacatctatgaatgtgttttctgtttgtaatcttgtggagaactgataaacatagtacacattcatgattaaactaact |
118 |
Q |
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| T |
49274311 |
ttaaatgtattgaaacttcaaaacatctgcgaatgtgttttctgtttgtaatcttgtggagaactgataaacatagtacacattcatgattaaactaact |
49274410 |
T |
|
| Q |
119 |
agcaaaagacatgtttggagattttttataattctgatgcattcaaatagtatagagatacagtatgacatgtgcagggacccaaatgactgcttactct |
218 |
Q |
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| T |
49274411 |
agcaaaaaaaatgtttggagattttttataattctgatgcattcaaatagtatagagatacagtatgacatgtgcagggacccaaatgactgcttactct |
49274510 |
T |
|
| Q |
219 |
gcaaatgatacaacagtagctcttaaactcaatagcatgcatagttaagagataagcctaatatggcaaaagaagacttgcaagaacgctgaacggctga |
318 |
Q |
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| T |
49274511 |
gcaaatgatacaacagtagctcttaaaatcaatagcatgcatagttaagagataagcctaatatggcaaaagaagacttgcaagaacgctgaacggctga |
49274610 |
T |
|
| Q |
319 |
agccagagacagcacaaagagagat----agcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49274611 |
agccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49274710 |
T |
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| Q |
415 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatat |
467 |
Q |
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| T |
49274711 |
aatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacatat |
49274763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 49254965 - 49254815
Alignment:
| Q |
315 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
414 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
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| Q |
415 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
465 |
Q |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
49254815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 49271633 - 49271483
Alignment:
| Q |
315 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
414 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
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| Q |
415 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
465 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacat |
49271483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 49267227 - 49267077
Alignment:
| Q |
315 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
414 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
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| Q |
415 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
465 |
Q |
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|||||||||||| ||| || |||||||||| |||||||||||||||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacat |
49267077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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