View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3398_low_4 (Length: 406)
Name: NF3398_low_4
Description: NF3398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3398_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 44577286 - 44577670
Alignment:
| Q |
20 |
gagtcttgtttctctctacttgttagatcaaatatttatcgcatcaatatgttagtgaaannnnnnncctgaagaatgctaggaatcagtcttcaaattc |
119 |
Q |
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| T |
44577286 |
gagtcttgtttctctctacttgttagatcaaatatttatcgcatcaatatgttagtgaaatttttttcctgaagaatgctaggaatcagtcttcaaattc |
44577385 |
T |
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| Q |
120 |
cttagacaaagacatgatttggagtttgtttcaatatatggtctgcaagcaattcctttacattgcaaactagaatgcttagtcttc--attttctctaa |
217 |
Q |
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| T |
44577386 |
cttagacaaagacatgatttggagtttgtttcaatatattgtctgcaagcaattcgtttacattacaaactagaatgcttagtcttctcattttctctaa |
44577485 |
T |
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| Q |
218 |
caccacatactcatgaggtttttaaggctcaaactcatagatagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaact |
317 |
Q |
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| T |
44577486 |
cactacatactcatgaggtttttaaggctcaaactcatagatagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaact |
44577585 |
T |
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| Q |
318 |
gggttggaccttgatttggaatgaagtttcatgtcgcactctgatcctaggagcccattatattgatcactatcctttgctactc |
402 |
Q |
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| T |
44577586 |
gggttggaccttgatttggaataaagtttcatgtcgcactctgatcctaggagcccattatattgatcactatcccttgttactc |
44577670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 1743737 - 1743672
Alignment:
| Q |
270 |
cacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgatttg |
335 |
Q |
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| T |
1743737 |
cacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggttggaccttgatttg |
1743672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 2006644 - 2006709
Alignment:
| Q |
269 |
ccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgattt |
334 |
Q |
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| T |
2006644 |
ccacttcaatggtgaacttgaaggcttgcttcatcaagtttcacaatctgggctggaccttgattt |
2006709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 336
Target Start/End: Original strand, 1498332 - 1498410
Alignment:
| Q |
258 |
atagacctcatccacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggttggaccttgatttgg |
336 |
Q |
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| T |
1498332 |
atagaccttagccacttcattggagaactagaaagcttgcttcatcaaattttataatctagattggaccttaatttgg |
1498410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 1743928 - 1743834
Alignment:
| Q |
91 |
aagaatgctaggaatcagtcttcaaattccttagacaaagacatgatttggagtttgtttcaatatatggtctgcaagcaattcctttacattgcaaac |
189 |
Q |
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| T |
1743928 |
aagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttc----tatggtctgcaagaaattcctttccattacaaac |
1743834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 189
Target Start/End: Original strand, 2006454 - 2006548
Alignment:
| Q |
91 |
aagaatgctaggaatcagtcttcaaattccttagacaaagacatgatttggagtttgtttcaatatatggtctgcaagcaattcctttacattgcaaac |
189 |
Q |
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| T |
2006454 |
aagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttc----tatggtctgcaagaaattcctttccattacaaac |
2006548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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