View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3399_high_1 (Length: 660)
Name: NF3399_high_1
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 531; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Original strand, 9670281 - 9670915
Alignment:
| Q |
18 |
caaagtagaaaaaaggtacccggagtacctcttatcaaataggtaatgatatgcaggagcat-gagtgtgcggatcaaattgctactccacaaatttttt |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9670281 |
caaagtagaaaaaaggtacccggagtacctcttatcaaataggtaatgatatgcaggagcatagagtgtgcggatcaaattgctactccacaaatttttt |
9670380 |
T |
|
| Q |
117 |
ctcaattattagatagaaattttattcaaattatctagcatcaataccataagtgaacactctctacaccttttgagaaggattcaagagatcacttagg |
216 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9670381 |
ctcaataattagatagaaattttattcaaattatctggcatcaataccataagtgaacactctctacaccttttgagaaggattcaagagatcacttagg |
9670480 |
T |
|
| Q |
217 |
gaggaccttaagctagataaaatggtacaccataaatagcaaacaaaccacctacaaagaattattcatgccactatgtgggtgtttagtaacccagtag |
316 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| |||||| ||||| |
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| T |
9670481 |
gaggaccttaagcttgataaaatggtacaccataaatagcaaacaaaccacctacaaagaattactcatgccgctacgtgggtgtttggtaacctagtag |
9670580 |
T |
|
| Q |
317 |
ctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacctacggcagcaccacaactttttga |
416 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9670581 |
ctcaccgctacctc-aagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacctacggcagcaccgcaactttttga |
9670679 |
T |
|
| Q |
417 |
aatatccaaacacacactgcaacacagaccacaccaattaggctaactcatagcaaccaaactaag--nnnnnnnnnnttacaccaatcaagatactagc |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
9670680 |
aatatccaaacacacactgcaacacagaccacaccaattaggctaactcatagcaaccaagctaagaaaaataaaaaattacaccaatcaagatactagc |
9670779 |
T |
|
| Q |
515 |
acacttctactattgtctgcaacaaagctacatgtgactctctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9670780 |
acacttctactattgtctgcaacaaagctacatgtgactttctttttcttagaggaaaatataagtgactctcttaaacaaatggtttttctcgaccttc |
9670879 |
T |
|
| Q |
615 |
tgtcttccctcttctttggggtgtcctcctcctatg |
650 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |
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| T |
9670880 |
tgtcttccctcttctttagggtgtcctcctcctatg |
9670915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 294 - 431
Target Start/End: Complemental strand, 13565248 - 13565112
Alignment:
| Q |
294 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
393 |
Q |
| |
|
|||||||||| | ||||| ||||||||| ||||||||| ||||| |||| ||| ||||||||||| |||||||| ||||| ||||||||||| |||| | |
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| T |
13565248 |
gtgggtgtttggcaacccggtagctcactgctacctcac-gtttaggaccttttgcaccgcaattttctaaagctacaattgctagcttttattcaacgt |
13565150 |
T |
|
| Q |
394 |
acggcagcaccacaac-tttttgaaatatccaaacacac |
431 |
Q |
| |
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|||||||||| ||| ||||||||||| |||||||||| |
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| T |
13565149 |
gcggcagcaccgtaacttttttgaaata-ccaaacacac |
13565112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 22366097 - 22366230
Alignment:
| Q |
294 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
393 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
22366097 |
gtgggtgtttggtaacctagtagctcaccgctacctcaa-gtttaagaccattttaaccgcaatttcctaaagctccaattactaacttttatccaacgt |
22366195 |
T |
|
| Q |
394 |
acggcagcaccacaactttttgaaatatccaaaca |
428 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
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| T |
22366196 |
acggcggcaccacaactttttgaaatatccaaaca |
22366230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 294 - 434
Target Start/End: Original strand, 36580588 - 36580727
Alignment:
| Q |
294 |
gtgggtgtttagtaacccagtagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacct |
393 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
36580588 |
gtgggtgtttggtaacccagtagctcaccgctaccttaa-gtttaagaccattttcaccgcaatttcctaaagctccgattactagcttttatccaacgt |
36580686 |
T |
|
| Q |
394 |
acggcagcaccacaactttttgaaatatccaaacacacact |
434 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||| |
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|
| T |
36580687 |
aaggtagcactgcaactttttgaaatatccaaacacacact |
36580727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 433
Target Start/End: Complemental strand, 29118402 - 29118289
Alignment:
| Q |
314 |
tagctcaccgctacctcaaagtttaagaccattttcaccgcaatttcctaaagctccaattactagcttttatccaacctacggcagcaccacaactttt |
413 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| || |||||||||||||||| ||||| |||||| ||||||| |
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| T |
29118402 |
tagctcaccgctacctcaa-gtttaagacccttttcaccgcaattttctaaagcacc-----ctagcttttatccaacgtacggtagcaccgtaactttt |
29118309 |
T |
|
| Q |
414 |
tgaaatatccaaacacacac |
433 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
29118308 |
tgaaatatccaaacacacac |
29118289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 9241397 - 9241286
Alignment:
| Q |
141 |
ttcaaattatctagcatcaataccataagtgaacactctctacaccttttgagaaggattcaagagatcacttagggaggaccttaagctagataaaatg |
240 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||| | ||||| |||||| |||||||| || |||| ||||| ||| | |||||||||| | |
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|
| T |
9241397 |
ttcaaagtatctagcatcaacaccataagtgaacactctc--cgtcttttaagaaggcttcaagaggccagttagtgaggagcttgacctagataaaagg |
9241300 |
T |
|
| Q |
241 |
gtacaccataaata |
254 |
Q |
| |
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||||||| ||||| |
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|
| T |
9241299 |
ttacaccaaaaata |
9241286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 494 - 542
Target Start/End: Original strand, 50510834 - 50510882
Alignment:
| Q |
494 |
tacaccaatcaagatactagcacacttctactattgtctgcaacaaagc |
542 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
50510834 |
tacaccaatgaagatactagcacacttatactattgttggcaacaaagc |
50510882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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