View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3399_high_3 (Length: 413)
Name: NF3399_high_3
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 42275125 - 42275522
Alignment:
| Q |
1 |
gcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgnnnnnnnattgttttttcactatactcccctgctttggttccatactcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275125 |
gcattgtgtatttttccagaattgtagaaaaaatattggtacgatgtatgctcccccattgttttttcactatactcccctgctttggttccatactcaa |
42275224 |
T |
|
| Q |
101 |
ccatagttactgtttccttgtcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaatatgtcacaaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42275225 |
ccatagtttctgtttccttgtcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacctacaagcaaaaaaatgtcacaaa |
42275324 |
T |
|
| Q |
201 |
caacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttttgaaatttttcactaaatgagtttgtgactggttggtttattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
42275325 |
caacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttttgaattttttcactaaatgagtttgtgac----tggtttattt |
42275420 |
T |
|
| Q |
301 |
agtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtgatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42275421 |
agtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatgaacctgttgaggttctgaattggagcgttgatggggagtgatga |
42275520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 26275458 - 26275401
Alignment:
| Q |
121 |
tcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacct |
178 |
Q |
| |
|
||||| ||||||||||| |||||||| | ||||||||| ||||| ||||| ||||||| |
|
|
| T |
26275458 |
tcttcagttatccatgatactctcatatgatctttccctaccaacgaaatgtgcacct |
26275401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University