View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3399_high_4 (Length: 365)

Name: NF3399_high_4
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3399_high_4
NF3399_high_4
[»] chr3 (19 HSPs)
chr3 (14-355)||(40129874-40130215)
chr3 (58-112)||(2667867-2667921)
chr3 (60-112)||(31520622-31520674)
chr3 (195-271)||(40141130-40141206)
chr3 (58-112)||(4844528-4844582)
chr3 (58-112)||(4870224-4870278)
chr3 (58-94)||(16991547-16991583)
chr3 (60-112)||(31788987-31789039)
chr3 (60-112)||(36720388-36720440)
chr3 (77-112)||(11090182-11090217)
chr3 (60-110)||(4222148-4222198)
chr3 (60-94)||(10499144-10499178)
chr3 (68-110)||(14339625-14339667)
chr3 (60-110)||(46518635-46518685)
chr3 (69-111)||(51903896-51903938)
chr3 (61-110)||(30311314-30311363)
chr3 (58-110)||(7975423-7975475)
chr3 (60-112)||(8051221-8051273)
chr3 (74-110)||(15048080-15048116)
[»] scaffold1367 (1 HSPs)
scaffold1367 (68-113)||(856-901)
[»] chr5 (6 HSPs)
chr5 (60-112)||(29075788-29075840)
chr5 (58-112)||(14495822-14495876)
chr5 (58-110)||(29692405-29692457)
chr5 (60-109)||(21549157-21549206)
chr5 (60-112)||(1410676-1410728)
chr5 (60-112)||(21589295-21589347)
[»] chr4 (6 HSPs)
chr4 (60-112)||(9241042-9241094)
chr4 (60-110)||(51250541-51250591)
chr4 (60-112)||(19238594-19238646)
chr4 (66-110)||(38869781-38869825)
chr4 (60-110)||(37109370-37109420)
chr4 (60-112)||(55427217-55427269)
[»] scaffold0299 (1 HSPs)
scaffold0299 (68-112)||(11543-11587)
[»] chr6 (7 HSPs)
chr6 (60-112)||(6776624-6776676)
chr6 (58-112)||(24641207-24641261)
chr6 (60-112)||(33549111-33549163)
chr6 (60-110)||(12188322-12188372)
chr6 (60-110)||(21418477-21418527)
chr6 (60-112)||(30127407-30127459)
chr6 (72-112)||(31623008-31623048)
[»] chr7 (11 HSPs)
chr7 (63-109)||(11720980-11721026)
chr7 (60-109)||(48771945-48771994)
chr7 (60-110)||(21854555-21854605)
chr7 (60-110)||(25021354-25021404)
chr7 (60-110)||(26459429-26459479)
chr7 (60-110)||(43590914-43590964)
chr7 (58-112)||(45709725-45709779)
chr7 (60-109)||(15905693-15905742)
chr7 (58-106)||(4161293-4161341)
chr7 (60-112)||(25590618-25590670)
chr7 (60-112)||(37085566-37085618)
[»] scaffold0258 (1 HSPs)
scaffold0258 (60-112)||(15340-15392)
[»] chr8 (7 HSPs)
chr8 (68-112)||(968377-968421)
chr8 (60-112)||(5264551-5264603)
chr8 (60-112)||(16852347-16852399)
chr8 (69-112)||(7140725-7140768)
chr8 (60-110)||(2203499-2203549)
chr8 (60-112)||(23874399-23874451)
chr8 (68-112)||(29858066-29858110)
[»] chr2 (7 HSPs)
chr2 (60-112)||(37755988-37756040)
chr2 (68-110)||(12086148-12086190)
chr2 (60-110)||(16918597-16918647)
chr2 (60-110)||(37480082-37480132)
chr2 (60-110)||(42327414-42327464)
chr2 (60-112)||(7799052-7799104)
chr2 (60-112)||(39714999-39715051)
[»] chr1 (14 HSPs)
chr1 (58-110)||(8177201-8177253)
chr1 (60-112)||(40257406-40257458)
chr1 (58-113)||(2069661-2069715)
chr1 (60-110)||(9165214-9165264)
chr1 (60-110)||(19528346-19528396)
chr1 (60-110)||(33700792-33700842)
chr1 (60-110)||(41508838-41508888)
chr1 (60-110)||(52116800-52116850)
chr1 (71-112)||(35562743-35562784)
chr1 (73-110)||(44046167-44046204)
chr1 (60-112)||(50901588-50901641)
chr1 (68-109)||(52336794-52336835)
chr1 (60-112)||(17410238-17410290)
chr1 (58-110)||(51703784-51703836)
[»] scaffold0021 (1 HSPs)
scaffold0021 (60-112)||(157004-157056)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 40130215 - 40129874
Alignment:
Q  14 catttttcactaatattctctattaaaaaattaagttaaagcctatttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcgaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||  | ||||| ||||  |||||||||||| |||||||||||||| ||||||||| ||| ||    
T  40130215 catttttcactaatattctctattaaaaaattaagttaaaatccatttgagtttatctggtggtattgacttgggatctggtagtgtgctccttctcaaa 40130116  T
Q  114 aatagaaattaatattgtacatttactctttgctaacttgatgtatttgataaacttgatccattgatgaaacagaaaccaggatggaagaagtttttgg 213  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40130115 aatagaaattaatattgtacactgactctttgctaacttgatgtatttgataaacttgatccattgatgaaacagaaaccaggatggaagaagtttttgg 40130016  T
Q  214 catatgtaggtcctggttttcttgtctccttggcctaccttgatcccggaaatagtaattttctctatctctatgtgtgtcatattatatacatttttcc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40130015 catatgtaggtcctggttttcttgtctccttggcctaccttgatcccggaaatagtaattttctctatctctatgtgtgtcatattatatacatttttcc 40129916  T
Q  314 cttcaaaaaattaaataattctttaattattttatccctatg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40129915 cttcaaaaaattaaataattctttaattattttatccctatg 40129874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 2667867 - 2667921
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||    
T  2667867 atttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctcga 2667921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 31520674 - 31520622
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||    
T  31520674 ttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcga 31520622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 271
Target Start/End: Complemental strand, 40141206 - 40141130
Alignment:
Q  195 ggatggaagaagtttttggcatatgtaggtcctggttttcttgtctccttggcctaccttgatcccggaaatagtaa 271  Q
    |||||||  ||||||||| ||||| |||| |||||||||||||| || ||||| ||||||||||| ||||| |||||    
T  40141206 ggatggagaaagtttttgccatatataggccctggttttcttgtttcgttggcttaccttgatcctggaaacagtaa 40141130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 4844582 - 4844528
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| | |||||||||||| |||||||||||| | |||||||||||||||    
T  4844582 atttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 4844528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 4870278 - 4870224
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| | |||||||||||| |||||||||||| | |||||||||||||||    
T  4870278 atttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 4870224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 16991547 - 16991583
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctgg 94  Q
    ||||||||| |||||||||||||||||||||||||||    
T  16991547 atttgggttggcctggtggtattggcttgggatctgg 16991583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 31789039 - 31788987
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| ||| |||||||||||||||||| | |||||||||||||||    
T  31789039 ttgggttggcctagtgttattggcttgggatctgggagtgtgctcctcctcga 31788987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 36720388 - 36720440
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| | ||||||||||||||||||||| ||| | |||||||||||||||    
T  36720388 ttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcga 36720440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 11090217 - 11090182
Alignment:
Q  77 tattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||||||||||||| |||||||||||||||||    
T  11090217 tattggcttgggatctgggaatgtgctcctcctcga 11090182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 4222148 - 4222198
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| || | |||||||||||||||||||||| | |||||||||||||    
T  4222148 ttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctc 4222198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 10499178 - 10499144
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctgg 94  Q
    ||||||| |||||||||||||||||||||||||||    
T  10499178 ttgggttggcctggtggtattggcttgggatctgg 10499144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 14339625 - 14339667
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||||||||||||||||||| ||| | |||||||||||||    
T  14339625 gcctggtggtattggcttgggatttgggagtgtgctcctcctc 14339667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 46518635 - 46518685
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| || | |||||||||||||||||||||| | |||||||||||||    
T  46518635 ttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctc 46518685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 51903938 - 51903896
Alignment:
Q  69 cctggtggtattggcttgggatctggtaatgtgctcctcctcg 111  Q
    |||| ||||||||||||||||||||| | ||||||||||||||    
T  51903938 cctgttggtattggcttgggatctgggagtgtgctcctcctcg 51903896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 30311314 - 30311363
Alignment:
Q  61 tgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||||| |||| ||||||| |||||||||||||| | |||||||||||||    
T  30311314 tgggttggcctagtggtataggcttgggatctgggagtgtgctcctcctc 30311363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 7975423 - 7975475
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||| |||| |||| ||||||| |||||||||||||| | |||||||||||||    
T  7975423 atttaggttggcctagtggtataggcttgggatctgggagtgtgctcctcctc 7975475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 8051221 - 8051273
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||||||||||||||||||||| |||| | | |||| ||||||||    
T  8051221 ttgggttggcctggtggtattggcttgggacctggcagtatgcttctcctcga 8051273  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 15048116 - 15048080
Alignment:
Q  74 tggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||||| |||||||||||||| |||||||||||||||    
T  15048116 tggtataggcttgggatctgggaatgtgctcctcctc 15048080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1367 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold1367
Description:

Target: scaffold1367; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 901 - 856
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctcgaa 113  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  901 gcctggtggtattggcttgggatctgggaatgtgctcctcctcgaa 856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 29075788 - 29075840
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||||||| |||||||||||||||||||||| | |||||||||||||||    
T  29075788 ttgggtttgcctagtggtattggcttgggatctgggagtgtgctcctcctcga 29075840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 14495876 - 14495822
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| | |||||||||||| |||||||||||| | |||||||||||||||    
T  14495876 atttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcga 14495822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 29692457 - 29692405
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||||| | ||||||||||||| ||||||||||| | |||||||||||||    
T  29692457 atttgggttggtctggtggtattggattgggatctgggagtgtgctcctcctc 29692405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 21549206 - 21549157
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcct 109  Q
    ||||||| |||| ||||||||||||||||| |||| | ||||||||||||    
T  21549206 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcct 21549157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 1410728 - 1410676
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| | |||||||||||| |||||||| ||| | |||||||||||||||    
T  1410728 ttgggttggtctggtggtattgacttgggatatgggagtgtgctcctcctcga 1410676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 21589295 - 21589347
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||||||||||||||||||||| |||| | | |||| ||||||||    
T  21589295 ttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcga 21589347  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 9241094 - 9241042
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||| |||||    
T  9241094 ttgggttggcctggtggtattggcttgggatctggtagtgtgctcctgctcga 9241042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 51250591 - 51250541
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||| ||||    
T  51250591 ttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctc 51250541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 19238646 - 19238594
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| ||||||||||||||||||||||  ||| | |||||||||||||||    
T  19238646 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcga 19238594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 38869781 - 38869825
Alignment:
Q  66 ttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||||| |||||||||||||||||||||| | |||||||||||||    
T  38869781 ttgcctagtggtattggcttgggatctgggagtgtgctcctcctc 38869825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 37109420 - 37109370
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  37109420 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 37109370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 55427269 - 55427217
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||||||||||||||||||||| |||| | | ||||||| |||||    
T  55427269 ttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcga 55427217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 11543 - 11587
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||||||||||||||||||||| | |||||||||||||||    
T  11543 gcctggtggtattggcttgggatctgggagtgtgctcctcctcga 11587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 6776676 - 6776624
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||||||||||||||||||||||||||   |||||||||||||||    
T  6776676 ttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctcga 6776624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 24641261 - 24641207
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| || ||||||||||| |||||||||||| | |||||||||||||||    
T  24641261 atttgggttggcttggtggtattgacttgggatctgggagtgtgctcctcctcga 24641207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 33549111 - 33549163
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| | |||||||||||||||||||| |||| | |||||||||||||||    
T  33549111 ttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcga 33549163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 12188372 - 12188322
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  12188372 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 12188322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 21418477 - 21418527
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||||||||||||||||||||  ||| | |||||||||||||    
T  21418477 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 21418527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 30127407 - 30127459
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| | ||||||||||||||||||| ||||| | |||||||||| ||||    
T  30127407 ttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcga 30127459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 31623048 - 31623008
Alignment:
Q  72 ggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||||||||||||| |||| | |||||||||||||||    
T  31623048 ggtggtattggcttgggacctgggagtgtgctcctcctcga 31623008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 11721026 - 11720980
Alignment:
Q  63 ggtttgcctggtggtattggcttgggatctggtaatgtgctcctcct 109  Q
    |||| |||||||||||||||||||||| |||| ||||||||||||||    
T  11721026 ggttggcctggtggtattggcttgggacctgggaatgtgctcctcct 11720980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 48771945 - 48771994
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcct 109  Q
    ||||||| || |||||||||||||||||||||||| | ||||||||||||    
T  48771945 ttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 21854555 - 21854605
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||| ||||||||||| ||||||||| | |||||||||||||    
T  21854555 ttgggttggcctgatggtattggctagggatctgggagtgtgctcctcctc 21854605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 25021404 - 25021354
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  25021404 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 25021354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 26459479 - 26459429
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  26459479 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 26459429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 43590914 - 43590964
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||||||||||||||||||||  ||| | |||||||||||||    
T  43590914 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 43590964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 45709779 - 45709725
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||| |||| |||||||| ||||||||||||  | |||||||||||||||    
T  45709779 atttgggttggcctagtggtattagcttgggatctgagagtgtgctcctcctcga 45709725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 15905742 - 15905693
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcct 109  Q
    ||||||| |||||| ||||||||||||||| |||| | ||||||||||||    
T  15905742 ttgggttggcctggcggtattggcttgggacctgggagtgtgctcctcct 15905693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 4161293 - 4161341
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcct 106  Q
    ||||||||| | ||||||||||||||||||||||| | | |||||||||    
T  4161293 atttgggttggtctggtggtattggcttgggatcttgaagtgtgctcct 4161341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 25590618 - 25590670
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||  |||| ||||||||||||| ||||||| | |||||||||||||||    
T  25590618 ttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcga 25590670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 37085618 - 37085566
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| || |||||||||||||||||||| ||| | ||||||| |||||||    
T  37085618 ttgggttggcatggtggtattggcttgggatttgggagtgtgctcatcctcga 37085566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 15392 - 15340
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| | |||||||||||||||||||| |||| | |||||||||||||||    
T  15392 ttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcga 15340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 968377 - 968421
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||||||||||||||||| |||| | |||||||||||||||    
T  968377 gcctggtggtattggcttgggacctgggagtgtgctcctcctcga 968421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 5264551 - 5264603
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| ||||||||||||||| | |||| |||||||||||||||||    
T  5264551 ttgggttggcctagtggtattggcttggaacctgggaatgtgctcctcctcga 5264603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 16852347 - 16852399
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||||    
T  16852347 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcga 16852399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 7140725 - 7140768
Alignment:
Q  69 cctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  7140725 cctggtggtattggcttgggatctgggtgtgtgctcctcctcga 7140768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 2203499 - 2203549
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  2203499 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 2203549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 23874451 - 23874399
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| ||||||||||||||||| |||| ||| ||| |||||||||    
T  23874451 ttgggttggcctagtggtattggcttgggacctgggaatctgcgcctcctcga 23874399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 29858110 - 29858066
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||||||||||||||||| | || | |||||||||||||||    
T  29858110 gcctggtggtattggcttgggaccagggagtgtgctcctcctcga 29858066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 37756040 - 37755988
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| || ||||||||||||||||||| |||| ||||||||||| |||||    
T  37756040 ttgggttggcttggtggtattggcttgggacctgggaatgtgctcctactcga 37755988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 12086190 - 12086148
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||||||||||||||||||||| |||| | |||||||||||||    
T  12086190 gcctggtggtattggcttgggacctggaagtgtgctcctcctc 12086148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 16918647 - 16918597
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| |||||||||| ||||||||||| | |||||||||||||    
T  16918647 ttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctc 16918597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 37480082 - 37480132
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||||||||||||||||||||| |||  | |||||||||||||    
T  37480082 ttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctc 37480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 42327464 - 42327414
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  42327464 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 42327414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 7799104 - 7799052
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||  |||||||||||||||||||||  ||| | |||||||||||||||    
T  7799104 ttgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcga 7799052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 39714999 - 39715051
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| || ||||||||||| ||||||| |||| | |||||||||||||||    
T  39714999 ttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcga 39715051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 8177253 - 8177201
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||| ||| |||| |||||||||||||||||||||| | |||||||||||||    
T  8177253 atttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctc 8177201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 40257406 - 40257458
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| ||||||||||||||||||| || |||| | |||||||||||||||    
T  40257406 ttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcga 40257458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 113
Target Start/End: Original strand, 2069661 - 2069715
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcgaa 113  Q
    ||||||||| ||||||| |||||| ||||||||||||  |||||||||||||||||    
T  2069661 atttgggttggcctggttgtattgacttgggatctgg-catgtgctcctcctcgaa 2069715  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 9165264 - 9165214
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||||| |||| | |||||||||||||    
T  9165264 ttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctc 9165214  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 19528396 - 19528346
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||||||||||||||||||||||||   | |||||||||||||    
T  19528396 ttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctc 19528346  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 33700842 - 33700792
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| |||| ||||||||||||||| |||||| | |||||||||||||    
T  33700842 ttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctc 33700792  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 41508838 - 41508888
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||||||||| ||| ||||||||||| | |||||||||||||    
T  41508838 ttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctc 41508888  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 52116850 - 52116800
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||| ||||||||||||||||||||||  ||| | |||||||||||||    
T  52116850 ttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 52116800  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 35562743 - 35562784
Alignment:
Q  71 tggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||||||||||||||| |||  |||||||||||||||||    
T  35562743 tggtggtattggcttgggacctgagaatgtgctcctcctcga 35562784  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 44046204 - 44046167
Alignment:
Q  73 gtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    |||||||||||||||||||||| | |||||||||||||    
T  44046204 gtggtattggcttgggatctgggagtgtgctcctcctc 44046167  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 50901588 - 50901641
Alignment:
Q  60 ttgggtttgcctggtggta-ttggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| |||||| ||||||||||| |||||| |||||||||||||||    
T  50901588 ttgggttggcctagtggtaattggcttgggacctggtagtgtgctcctcctcga 50901641  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 52336835 - 52336794
Alignment:
Q  68 gcctggtggtattggcttgggatctggtaatgtgctcctcct 109  Q
    |||| |||||||||||||||||||||| | ||||||||||||    
T  52336835 gcctagtggtattggcttgggatctgggagtgtgctcctcct 52336794  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 17410238 - 17410290
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    ||||||| |||| |||||||||| ||||||||||| | |||| ||||||||||    
T  17410238 ttgggttggcctagtggtattggtttgggatctgggagtgtggtcctcctcga 17410290  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 51703784 - 51703836
Alignment:
Q  58 atttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctc 110  Q
    ||||||||| | || ||||||||||||||| |||||| | |||||||||||||    
T  51703784 atttgggttggtctagtggtattggcttggaatctgggagtgtgctcctcctc 51703836  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 157056 - 157004
Alignment:
Q  60 ttgggtttgcctggtggtattggcttgggatctggtaatgtgctcctcctcga 112  Q
    |||||||  |||| ||||||||||||| ||||||| | |||||||||||||||    
T  157056 ttgggttgacctgttggtattggcttgagatctgggagtgtgctcctcctcga 157004  T

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