View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3399_high_8 (Length: 250)
Name: NF3399_high_8
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 40870354 - 40870578
Alignment:
| Q |
11 |
cagagactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaag |
110 |
Q |
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| T |
40870354 |
cagaaactagaccatggatcattatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaaatcatctaccaagttcacctaagtgaag |
40870453 |
T |
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| Q |
111 |
ggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaat |
210 |
Q |
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| T |
40870454 |
ggacatatatacataatcattaactcgaaaaataactcttgaaatttcaagcatttcataatttgtcgcatgtgtacataaattttgttacaatattaat |
40870553 |
T |
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| Q |
211 |
ttctttcatctttgcactatatatt |
235 |
Q |
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| T |
40870554 |
ttctttcatctttgcactatgtatt |
40870578 |
T |
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 43100162 - 43100111
Alignment:
| Q |
31 |
attatcaatctggcttgactctaccacaggtatatgaaatcaaatgtctcaa |
82 |
Q |
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| T |
43100162 |
attaacaatctggctcgactctacatcaggtatatgaaatcaaatgtctcaa |
43100111 |
T |
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