View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3399_low_5 (Length: 346)
Name: NF3399_low_5
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 165 - 334
Target Start/End: Complemental strand, 16811207 - 16811038
Alignment:
| Q |
165 |
ctaactctatggtgctgtggctgctcttaataacaacatcttcctcattgggtttccatattttcttgcatgatgaacaaatggtccaatttgcagcttt |
264 |
Q |
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| T |
16811207 |
ctaactctatggtgctgtggctgctcttaataacaacatcttcctcattgggtttccatattttcttgcatgatgaacaaatggtccaatttgcagcttt |
16811108 |
T |
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| Q |
265 |
agatgattgagttgtatttgatggtccaacttttaatgcacgcagttcttctaattccttcttcaaccta |
334 |
Q |
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| T |
16811107 |
agatgattgagttgtatttgatggtccaacttttaatgcacgcagttcttctaattccttcttcaaccta |
16811038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 165 - 334
Target Start/End: Complemental strand, 16850486 - 16850317
Alignment:
| Q |
165 |
ctaactctatggtgctgtggctgctcttaataacaacatcttcctcattgggtttccatattttcttgcatgatgaacaaatggtccaatttgcagcttt |
264 |
Q |
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| T |
16850486 |
ctaactctatggtgctgtggctgctcttaataacaacatcttcctcattgggtttccatattttcttgcatgatgaacaaatggtccaatttgcagcttt |
16850387 |
T |
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| Q |
265 |
agatgattgagttgtatttgatggtccaacttttaatgcacgcagttcttctaattccttcttcaaccta |
334 |
Q |
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| T |
16850386 |
agatgattgagttgtatttgatggtccaacttttaatgcacgcagttcttctaattccttcttcaaccta |
16850317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 16811348 - 16811287
Alignment:
| Q |
20 |
taggtaacctaaccgcagtcctatacatgataatttggtgtgcggactgagatattgtgtac |
81 |
Q |
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| T |
16811348 |
taggtaacctaaccgcagtcctatacatcataatttggtgtgcggactgagatattgtgtac |
16811287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 16850627 - 16850566
Alignment:
| Q |
20 |
taggtaacctaaccgcagtcctatacatgataatttggtgtgcggactgagatattgtgtac |
81 |
Q |
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| T |
16850627 |
taggtaacctaaccgcagtcctatacatcataatttggtgtgcggactgagatattgtgtac |
16850566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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