View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3399_low_6 (Length: 344)
Name: NF3399_low_6
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 26 - 324
Target Start/End: Complemental strand, 45643724 - 45643432
Alignment:
| Q |
26 |
agatggagaatcaaagttaatttgttacatagtttctctatatatagagaagtctaatgaactctcactttagatttccccaattcaaaaatctctcctc |
125 |
Q |
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| T |
45643724 |
agatagagaatcaaagttaatttgtttcatagtttccctatatatagagaagtctaatgaactctcactttagatttccccaattcaaaaatctctcctc |
45643625 |
T |
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| Q |
126 |
tctctttctacgtatcatatataagctaacaactcccaatcccattcttgcttgcaattacataaagctaacccattatatctcaattctcaaacaagat |
225 |
Q |
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| T |
45643624 |
tctctttctacgtaccatatat----taacaactcccaatcccattcttgcttgcaattacataaagctaaaccat--tatctcaattctcaaataagat |
45643531 |
T |
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| Q |
226 |
tctcgtagcctccttgattaaaatggctttctctaatgctttgattttatgcttctttttagctatcactatggcattgccgactctggcaacaaacca |
324 |
Q |
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| T |
45643530 |
cctcgtagcttccttgattaaaatggctttctctaatgctttggttttatgcttctttttagctatcactatgccattgccgactctggcaacaaacca |
45643432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 45702522 - 45702718
Alignment:
| Q |
1 |
atatcaattttttgttatggaagaaagatggagaatcaaagttaatttgttacatagtttctctatatatagagaagtctaatgaa----ctctca-ctt |
95 |
Q |
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| T |
45702522 |
atatcaattttttgttatggaagaaagatggagaatcaaagttaatttgttacatagtttctctatatataaagaagtctaatgaattgcctttcagctt |
45702621 |
T |
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| Q |
96 |
tagatttccccaattcaaaaatctctcctctctctttctacgtatcatatataagctaacaactcccaatcccattc-ttgcttgcaattacataaag |
192 |
Q |
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| T |
45702622 |
tagatttccccaattc-aaaatctctcctctctctttctacgtaccatatataagctaacaactcccaatcccattctttgcttgcaattatataaag |
45702718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 45702816 - 45702898
Alignment:
| Q |
242 |
attaaaatggctttctctaatgctttgattttatgcttctttttagctatcactatggcattgccgactctggcaacaaacca |
324 |
Q |
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| T |
45702816 |
attaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaacca |
45702898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 45886628 - 45886710
Alignment:
| Q |
242 |
attaaaatggctttctctaatgctttgattttatgcttctttttagctatcactatggcattgccgactctggcaacaaacca |
324 |
Q |
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| T |
45886628 |
attaaaatgacattctttaaggctttggttttatgcttctttttagcgatcactatgccattgccgactctggcaacaaacca |
45886710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 45650815 - 45650751
Alignment:
| Q |
254 |
ttctctaatgctttgattttatgcttctttttagctatcactatggcattgccgactctggcaac |
318 |
Q |
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| T |
45650815 |
ttctctaatcctttgattttaggcttctttttagtgatcaatgtggcagtgccaactcttgcaac |
45650751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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