View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3399_low_7 (Length: 297)
Name: NF3399_low_7
Description: NF3399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3399_low_7 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold1176 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 277
Target Start/End: Original strand, 164951 - 165084
Alignment:
| Q |
139 |
tcaaaactttctagttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcac |
238 |
Q |
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| T |
164951 |
tcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggcttcttctca-----ctcggctgtgttgatgcttttcgttgcac |
165045 |
T |
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| Q |
239 |
tgtttctgagttccgctgttgctcgatcaccgccatcat |
277 |
Q |
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| T |
165046 |
tgtttctgagttccgctgttgctcgatcaccaccatcat |
165084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 14248775 - 14248642
Alignment:
| Q |
139 |
tcaaaactttctagttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcac |
238 |
Q |
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| T |
14248775 |
tcaaaactttctagttaaccctaatattcccattctcgttcatctttctactatggcttcttctca-----ctcggctgtgttgatgcttttcgttgcac |
14248681 |
T |
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| Q |
239 |
tgtttctgagttccgctgttgctcgatcaccgccatcat |
277 |
Q |
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| T |
14248680 |
tgtttctgagttccgctgttgctcgatcaccaccatcat |
14248642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 214 - 277
Target Start/End: Complemental strand, 14317252 - 14317189
Alignment:
| Q |
214 |
gctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcat |
277 |
Q |
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| T |
14317252 |
gctgtgttgatgcttttggttgcactgtttctgagttccgctgttgctcgatcaccaccatcat |
14317189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 124 - 267
Target Start/End: Complemental strand, 3899 - 3759
Alignment:
| Q |
124 |
aacaatatcactgcttcaaaactttcta--gttaaccctaattttcccattctccttcatctttcaactatggcttcttctcatatcacaccgctgtgtt |
221 |
Q |
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| T |
3899 |
aacaatatcactgctacaaaactttatatagttaaccctaattttcctattctccttcatctttctactatggcttcttc-ca----aaaccgctgtgtt |
3805 |
T |
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| Q |
222 |
gatgcttttggttgcactgtttctgagttccgctgttgctcgatca |
267 |
Q |
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| T |
3804 |
gatgcttttggttgcactgttgctgagttccgccgttgctagatca |
3759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 83 - 17
Alignment:
| Q |
118 |
caacacaacaatatcactgcttcaaaactttcta--gttaaccctaattttcccattctccttcatc |
182 |
Q |
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| T |
83 |
caacacaataatatcattgcttcaaaactttatattgttaaccctaatattcccattctccatcatc |
17 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 1 - 51
Alignment:
| Q |
227 |
ttttggttgcactgtttctgagttccgctgttgctcgatcaccgccatcat |
277 |
Q |
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| T |
1 |
ttttggttgcactgtttctgagttccgccgttgctagatcaccaccatcat |
51 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 277
Target Start/End: Complemental strand, 37245478 - 37245361
Alignment:
| Q |
155 |
aaccctaattttcccattctccttc---atctttcaactatggcttcttctcatatcacaccgctgtgttgatgcttttggttgcactgtttctgagttc |
251 |
Q |
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| T |
37245478 |
aaccctaatattcccattctccttcttcatctttctactatggcttcct--------acaccgttgtgctgatgcttttggttgcactgctgctggattc |
37245387 |
T |
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| Q |
252 |
cgctgttgctcgatcaccgccatcat |
277 |
Q |
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| T |
37245386 |
cacagttgctcgatcaccaccatcat |
37245361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 1206 - 1240
Alignment:
| Q |
216 |
tgtgttgatgcttttggttgcactgtttctgagtt |
250 |
Q |
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| T |
1206 |
tgtgttgatgcttttggttgcactgtttctaagtt |
1240 |
T |
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