View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3400_high_1 (Length: 274)

Name: NF3400_high_1
Description: NF3400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3400_high_1
NF3400_high_1
[»] chr2 (28 HSPs)
chr2 (51-263)||(12632773-12632989)
chr2 (18-103)||(42327364-42327444)
chr2 (50-103)||(38854431-38854484)
chr2 (56-110)||(9219485-9219539)
chr2 (167-241)||(18674213-18674287)
chr2 (45-103)||(26276404-26276462)
chr2 (160-217)||(23078308-23078364)
chr2 (57-110)||(31573603-31573656)
chr2 (160-217)||(40739038-40739094)
chr2 (160-212)||(14698851-14698902)
chr2 (57-108)||(360707-360758)
chr2 (45-104)||(11251136-11251195)
chr2 (177-252)||(28770576-28770650)
chr2 (52-103)||(37971951-37972002)
chr2 (44-102)||(2311772-2311830)
chr2 (45-103)||(29503320-29503377)
chr2 (45-103)||(37480124-37480182)
chr2 (160-217)||(3278204-3278261)
chr2 (183-212)||(11049494-11049523)
chr2 (160-217)||(21630149-21630205)
chr2 (160-217)||(34389055-34389111)
chr2 (160-217)||(36757599-36757655)
chr2 (50-95)||(45672206-45672251)
chr2 (50-95)||(45672355-45672400)
chr2 (160-212)||(8040268-8040319)
chr2 (160-212)||(10445309-10445360)
chr2 (50-90)||(40897961-40898001)
chr2 (173-217)||(41586387-41586431)
[»] chr4 (28 HSPs)
chr4 (1-73)||(11842919-11842991)
chr4 (18-103)||(7949423-7949503)
chr4 (163-217)||(37782070-37782124)
chr4 (18-98)||(21344844-21344918)
chr4 (55-110)||(32662813-32662868)
chr4 (160-217)||(6743252-6743308)
chr4 (61-110)||(25789752-25789801)
chr4 (18-103)||(46295124-46295204)
chr4 (185-217)||(5208039-5208071)
chr4 (55-103)||(47386760-47386808)
chr4 (55-110)||(49262646-49262701)
chr4 (18-88)||(32992639-32992704)
chr4 (160-217)||(5112441-5112497)
chr4 (160-217)||(5143464-5143520)
chr4 (50-103)||(8325348-8325401)
chr4 (160-217)||(10047585-10047641)
chr4 (160-217)||(16623130-16623186)
chr4 (160-217)||(16628709-16628765)
chr4 (160-201)||(18377563-18377604)
chr4 (45-110)||(38838846-38838911)
chr4 (160-212)||(24334015-24334066)
chr4 (185-217)||(24969051-24969083)
chr4 (18-103)||(37720183-37720263)
chr4 (15-103)||(39509094-39509177)
chr4 (50-110)||(40283948-40284008)
chr4 (50-110)||(51948534-51948594)
chr4 (185-217)||(52467551-52467583)
chr4 (55-103)||(55427169-55427217)
[»] chr1 (17 HSPs)
chr1 (160-252)||(25116502-25116595)
chr1 (50-103)||(15065019-15065072)
chr1 (45-103)||(51814543-51814601)
chr1 (160-217)||(47102676-47102732)
chr1 (50-110)||(6948039-6948099)
chr1 (160-217)||(11031311-11031366)
chr1 (45-103)||(12587319-12587376)
chr1 (160-217)||(3281911-3281967)
chr1 (177-238)||(8281539-8281599)
chr1 (160-217)||(13604459-13604515)
chr1 (160-217)||(16124351-16124407)
chr1 (160-217)||(29652017-29652073)
chr1 (18-103)||(31605817-31605897)
chr1 (160-217)||(37069971-37070027)
chr1 (160-217)||(47098662-47098718)
chr1 (185-217)||(928174-928206)
chr1 (160-212)||(40816658-40816709)
[»] scaffold0002 (1 HSPs)
scaffold0002 (163-252)||(14889-14978)
[»] chr8 (30 HSPs)
chr8 (45-103)||(23361618-23361676)
chr8 (160-243)||(31513143-31513226)
chr8 (18-103)||(2203519-2203599)
chr8 (18-103)||(3624607-3624686)
chr8 (18-103)||(6536547-6536627)
chr8 (160-217)||(19175591-19175647)
chr8 (45-103)||(28783109-28783167)
chr8 (45-103)||(29858018-29858076)
chr8 (18-103)||(968389-968469)
chr8 (53-98)||(3058023-3058068)
chr8 (45-104)||(19703455-19703514)
chr8 (175-217)||(7493010-7493051)
chr8 (45-103)||(18546331-18546389)
chr8 (50-103)||(8867482-8867535)
chr8 (50-103)||(10287529-10287582)
chr8 (18-103)||(16852367-16852447)
chr8 (160-201)||(19752246-19752287)
chr8 (18-103)||(26688892-26688972)
chr8 (69-110)||(35826384-35826425)
chr8 (50-103)||(43292405-43292458)
chr8 (18-74)||(3524399-3524450)
chr8 (55-103)||(7347896-7347944)
chr8 (55-103)||(11492042-11492090)
chr8 (54-110)||(22786007-22786063)
chr8 (160-212)||(26403071-26403122)
chr8 (185-217)||(30291545-30291577)
chr8 (45-101)||(35690035-35690091)
chr8 (50-110)||(40591783-40591843)
chr8 (50-110)||(43533681-43533741)
chr8 (50-110)||(43594280-43594340)
[»] chr3 (29 HSPs)
chr3 (18-103)||(54990729-54990809)
chr3 (175-261)||(5366103-5366190)
chr3 (45-97)||(14186696-14186748)
chr3 (50-110)||(17035040-17035100)
chr3 (167-223)||(21156640-21156696)
chr3 (160-217)||(8126834-8126890)
chr3 (18-103)||(19716224-19716304)
chr3 (160-217)||(26928425-26928481)
chr3 (185-217)||(1314002-1314034)
chr3 (45-104)||(24353349-24353406)
chr3 (58-102)||(36015510-36015554)
chr3 (55-103)||(52769952-52770000)
chr3 (160-219)||(1736128-1736186)
chr3 (51-102)||(31714371-31714422)
chr3 (45-103)||(33899663-33899721)
chr3 (160-217)||(16264553-16264609)
chr3 (160-217)||(27986282-27986338)
chr3 (160-217)||(35925682-35925738)
chr3 (160-217)||(36029297-36029353)
chr3 (160-217)||(40592608-40592664)
chr3 (160-217)||(47923730-47923786)
chr3 (160-212)||(3715833-3715884)
chr3 (51-110)||(8170727-8170786)
chr3 (55-103)||(10499078-10499126)
chr3 (160-212)||(18552716-18552767)
chr3 (200-252)||(29100407-29100459)
chr3 (185-217)||(29196584-29196616)
chr3 (45-93)||(35981665-35981713)
chr3 (185-217)||(44700675-44700707)
[»] chr6 (18 HSPs)
chr6 (160-252)||(30517926-30518022)
chr6 (45-103)||(24333994-24334052)
chr6 (24-103)||(8597716-8597794)
chr6 (160-217)||(5017333-5017389)
chr6 (160-217)||(22963903-22963959)
chr6 (160-217)||(23824434-23824490)
chr6 (18-110)||(24507498-24507585)
chr6 (45-109)||(28841463-28841527)
chr6 (160-219)||(31936779-31936837)
chr6 (52-110)||(32006410-32006467)
chr6 (164-217)||(5572080-5572132)
chr6 (160-217)||(5757315-5757371)
chr6 (51-88)||(7389022-7389059)
chr6 (160-213)||(18233050-18233102)
chr6 (45-110)||(28363986-28364051)
chr6 (160-212)||(21801186-21801237)
chr6 (160-212)||(24435813-24435864)
chr6 (164-212)||(33721400-33721447)
[»] chr5 (11 HSPs)
chr5 (18-99)||(30883171-30883247)
chr5 (167-223)||(5611353-5611409)
chr5 (52-103)||(35705042-35705093)
chr5 (18-103)||(16457837-16457917)
chr5 (160-217)||(9353169-9353225)
chr5 (160-217)||(11916809-11916865)
chr5 (160-217)||(28832461-28832517)
chr5 (160-217)||(36932185-36932241)
chr5 (55-104)||(43241650-43241699)
chr5 (45-110)||(43442245-43442310)
chr5 (78-110)||(17877122-17877154)
[»] chr7 (26 HSPs)
chr7 (52-103)||(4572266-4572317)
chr7 (45-103)||(279923-279981)
chr7 (45-103)||(41519234-41519291)
chr7 (45-98)||(2882999-2883052)
chr7 (45-110)||(15137602-15137667)
chr7 (45-110)||(20335793-20335858)
chr7 (160-217)||(21989112-21989168)
chr7 (18-103)||(38374568-38374648)
chr7 (50-103)||(41487413-41487466)
chr7 (45-103)||(19553502-19553560)
chr7 (45-103)||(21558177-21558235)
chr7 (45-103)||(42712007-42712065)
chr7 (160-217)||(2479540-2479596)
chr7 (45-110)||(9183153-9183218)
chr7 (160-217)||(9185011-9185067)
chr7 (160-217)||(9189844-9189900)
chr7 (160-217)||(20284293-20284349)
chr7 (50-103)||(30579389-30579442)
chr7 (18-102)||(5579204-5579283)
chr7 (160-212)||(29160009-29160060)
chr7 (18-98)||(29385717-29385792)
chr7 (45-101)||(30217928-30217984)
chr7 (185-217)||(36146605-36146637)
chr7 (51-103)||(41519079-41519131)
chr7 (160-212)||(46516147-46516198)
chr7 (50-110)||(48983695-48983755)
[»] scaffold0337 (1 HSPs)
scaffold0337 (18-110)||(1780-1867)
[»] scaffold0115 (1 HSPs)
scaffold0115 (50-110)||(42626-42686)
[»] scaffold0258 (1 HSPs)
scaffold0258 (18-103)||(15292-15372)
[»] scaffold0176 (1 HSPs)
scaffold0176 (175-217)||(17470-17511)
[»] scaffold0118 (1 HSPs)
scaffold0118 (45-103)||(41602-41660)
[»] scaffold0140 (1 HSPs)
scaffold0140 (160-217)||(8254-8310)
[»] scaffold0087 (1 HSPs)
scaffold0087 (160-217)||(43798-43854)
[»] scaffold0006 (1 HSPs)
scaffold0006 (160-217)||(133116-133172)
[»] scaffold0194 (1 HSPs)
scaffold0194 (45-97)||(13021-13073)
[»] scaffold0148 (1 HSPs)
scaffold0148 (160-212)||(10935-10986)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 12632773 - 12632989
Alignment:
Q  51 ctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttcttnnnnnnnnnn--tgaatcctaagagaaaacactaaattag 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||            ||||||||||||||||||||||||||||    
T  12632773 ctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttagttttttttttaaaaataatgaatcctaagagaaaacactaaattag 12632872  T
Q  149 aaagnnnnnnn-atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaact 247  Q
     |||        |||  ||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||     
T  12632873 gaagttttttttatctctccaataataaaatctcatcacccaaggtgtttacaaatgtttctcaacccaataaataaactctcattaaagacactcaacc 12632972  T
Q  248 ctaaa-ttatctccttt 263  Q
    ||||| |||||||||||    
T  12632973 ctaaagttatctccttt 12632989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 42327444 - 42327364
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||||||||||||||||| |||||| |||||| |||||| ||||||||||||||    
T  42327444 tggcttgggacctgggagtgtgctcctc-----ctcaaggtctcaggttcgattctcttcggtgccaatttgggtgggctaattta 42327364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 38854484 - 38854431
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||    
T  38854484 cctcaaggtctcaggttcgattatcaccggggtcaatttaggtgggctaattta 38854431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 9219485 - 9219539
Alignment:
Q  56 ggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||||||||| | |||||||||||   |||||||||||||||||||    
T  9219485 ggtctcaggttcaattctccttggtgtcaatttgaatgggctaatttaatttctt 9219539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 18674287 - 18674213
Alignment:
Q  167 caataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacac 241  Q
    ||||||| |||||||| | | |||||||||||| |||||||||||| |||| || ||||||||||  ||||||||    
T  18674287 caataatgaaatctcactgctcaaggtgtttacgaatgtttcccaacccaagaattaaactctcaccaaagacac 18674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 26276404 - 26276462
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||||||||||  ||||| ||||||||||||||||||| || |||||    
T  26276404 ctcctcctcaaggtctcaggttcgtttctcgtcggtgtcaatttaggtggactgattta 26276462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 23078364 - 23078308
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    ||||||||||| || |||||||| |||||||||||||||| |||||||||||| ||||    
T  23078364 atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 23078308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 31573656 - 31573603
Alignment:
Q  57 gtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||||||| |||||    
T  31573656 gtctcaggttcgattctcttcgatgtcaatttaggtggactaatttaacttctt 31573603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 40739038 - 40739094
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | ||||||||||||||||||||||||| |||||||||||| ||||    
T  40739038 atccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaa 40739094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 14698902 - 14698851
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||| | |||||||| |||||||||||||||| ||||||||||||    
T  14698902 atccttccaatagtgaaatctcactacccaaggtgtttac-aatgtttcccaa 14698851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 108
Target Start/End: Complemental strand, 360758 - 360707
Alignment:
Q  57 gtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttc 108  Q
    |||||||||||||||||| ||||||| ||||| |||||| ||||||| ||||    
T  360758 gtctcaggttcaattctcttcggtgttaatttgggtgggttaatttagtttc 360707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 11251136 - 11251195
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaa 104  Q
    |||| |||||||||||||||||  ||||||   |||||||||||||||| ||||||||||    
T  11251136 ctcctcctcaaggtctcaggtttgattctctctggtgtcaatttaggtgtgctaatttaa 11251195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 28770650 - 28770576
Alignment:
Q  177 atctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa 252  Q
    |||||| |||||||||||||||||||||||| |||| ||||  || |||| ||||  ||||||||||||| |||||    
T  28770650 atctcactacccaaggtgtttacaaatgttttccaa-ccaaagaaaaaacactcaccaaagacactcaaccctaaa 28770576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 37971951 - 37972002
Alignment:
Q  52 tcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||| ||||||  ||||| |||||||||||||||||||||    
T  37971951 tcaaagtctcaggttcgattctctccggtgccaatttaggtgggctaattta 37972002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 2311772 - 2311830
Alignment:
Q  44 cctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattt 102  Q
    ||||| |||| ||||||||||||| ||| || |||||||||||||  ||||||||||||    
T  2311772 cctcctcctcgaggtctcaggttcgattttcttcggtgtcaatttgagtgggctaattt 2311830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 29503320 - 29503377
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||| ||||||  ||||||||||||| |||||| ||||||    
T  29503320 ctcctcctcaaggtctcaggttcgattctc-ccggtgtcaatttaagtgggcaaattta 29503377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 37480124 - 37480182
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||| ||||||  ||||  |||||| ||||||||||||||    
T  37480124 ctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaattta 37480182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 3278204 - 3278261
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||| ||| ||||| |||||||| || ||||||||||||||||||||| |||| ||||    
T  3278204 atccgtcctataatgaaatctcactatccaaggtgtttacaaatgttttccaacccaa 3278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 11049523 - 11049494
Alignment:
Q  183 ttacccaaggtgtttacaaatgtttcccaa 212  Q
    ||||||||||||||||||||||||||||||    
T  11049523 ttacccaaggtgtttacaaatgtttcccaa 11049494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 21630149 - 21630205
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  21630149 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 21630205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 34389055 - 34389111
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  34389055 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 34389111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 36757655 - 36757599
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  36757655 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 36757599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 45672251 - 45672206
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtggg 95  Q
    |||| |||||||||||||||||||| || |||||||||| ||||||    
T  45672251 cctctaggtctcaggttcaattctcctccgtgtcaatttgggtggg 45672206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Complemental strand, 45672400 - 45672355
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtggg 95  Q
    |||| |||||||||||||||||||| || |||||||||| ||||||    
T  45672400 cctctaggtctcaggttcaattctcctccgtgtcaatttgggtggg 45672355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 8040268 - 8040319
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  8040268 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 8040319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 10445360 - 10445309
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  10445360 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 10445309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Complemental strand, 40898001 - 40897961
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttag 90  Q
    ||||||||||||||||||||||||| ||| ||| |||||||    
T  40898001 cctcaaggtctcaggttcaattctcttcgatgttaatttag 40897961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 41586431 - 41586387
Alignment:
Q  173 taaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||| |||||||||||||||||| ||||| |||| ||||    
T  41586431 taaaatctcactacccaaggtgtttacaactgttttccaacccaa 41586387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 11842991 - 11842919
Alignment:
Q  1 atatgtctgtctgctaatggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattct 73  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  11842991 atatgtctgtctgctaatggcttgagaccttggagtgtgctccactcctcctcaaggtctcaggttcaattct 11842919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 7949503 - 7949423
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||||||||||||||||| ||||||   ||||||||||||||||||||||||||    
T  7949503 tggcttgggacctcggagtgtgctcctc-----ctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaattta 7949423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 37782070 - 37782124
Alignment:
Q  163 cttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    ||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||    
T  37782070 cttccaataatgaaatctcactacccaaggtgtttacaaatgttttccaacccaa 37782124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 21344844 - 21344918
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggcta 98  Q
    |||||||||||||||||||||||||| |||      ||||||||| |||||||||||  | ||||||||||||||||||||    
T  21344844 tggcttgggaccttggagtgtgctcctctc------aaggtctcatgttcaattctccccagtgtcaatttaggtgggcta 21344918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 32662813 - 32662868
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||| ||| || |||||||||||||| |||||||||||||| |||||    
T  32662813 aggtctcaggttcgattttcttcggtgtcaatttaagtgggctaatttaacttctt 32662868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 6743308 - 6743252
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | ||||||||||||||||||||||||| |||||||||||| ||||    
T  6743308 atccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaa 6743252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 25789752 - 25789801
Alignment:
Q  61 caggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||| |||||||||||| ||||||| |||||||||||||| ||||||    
T  25789752 caggttcgattctcatcggtatcaatttgggtgggctaatttagtttctt 25789801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 46295124 - 46295204
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||| |||||||||||||| |     ||||||||||||||||| ||||||  ||||| |||||| ||||||||| ||||    
T  46295124 tggcttgggacattggagtgtgctcctc-----ctcaaggtctcaggttcgattctccccggtgccaatttgggtgggctagttta 46295204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 5208039 - 5208071
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||||||||    
T  5208039 acccaaggtgtttacaaatgtttcccaatccaa 5208071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 47386808 - 47386760
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||||||||||    |||||||||||||||||||||||||    
T  47386808 aggtctcaggttcaattctctctagtgtcaatttaggtgggctaattta 47386760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 49262701 - 49262646
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||| ||||||  | ||| ||||||||||||||||||||| ||||||    
T  49262701 aggtctcaggttcgattctccccagtgccaatttaggtgggctaatttagtttctt 49262646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 32992639 - 32992704
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaattt 88  Q
    |||||||||||||||||||||||||| |     |||||||||||| |||| ||||||  ||||||||||||    
T  32992639 tggcttgggaccttggagtgtgctcctc-----ctcaaggtctcaagttcgattctccccggtgtcaattt 32992704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 5112441 - 5112497
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  5112441 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 5112497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 5143464 - 5143520
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||| |||||||||||||| ||||||||||||||    
T  5143464 atccttccaatggtgaaatctcactacctaaggtgtttacaaa-gtttcccaatccaa 5143520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 8325401 - 8325348
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||| |||||| ||||||  |||||||||||| ||||||||| ||||    
T  8325401 cctcaaggtcttaggttcgattctccccggtgtcaatttgggtgggctagttta 8325348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 10047585 - 10047641
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  10047585 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 10047641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 16623186 - 16623130
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  16623186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 16623130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 16628765 - 16628709
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  16628765 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 16628709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 18377563 - 18377604
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaa 201  Q
    |||||||||||  |||||||||||||||||||| ||||||||    
T  18377563 atccttccaatggtaaaatctcattacccaaggggtttacaa 18377604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 38838846 - 38838911
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| ||||||||||| |||||| ||||||  || || |||||| |||||||||||||| ||||||    
T  38838846 ctcctcctcaaggtcttaggttcgattctctccgatggcaatttcggtgggctaatttagtttctt 38838911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 24334015 - 24334066
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  24334015 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 24334066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 24969083 - 24969051
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  24969083 acccaaggtgtttacaaatgtttcccaacccaa 24969051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 37720263 - 37720183
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||  ||||||   |||||||| ||||||| ||||||   ||  ||||||||||||||||||||||    
T  37720263 tggcttgggacctgggagtgtgc--ccctcc---tcaaggtcccaggttcgattctcccagggatcaatttaggtgggctaattta 37720183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 39509094 - 39509177
Alignment:
Q  15 taatggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| || |||||||||||| |     ||| ||||||||||||| ||||||  | ||| ||||||||||||| |||||||    
T  39509094 taatggcttgggatctgggagtgtgctcctc-----ctcgaggtctcaggttcgattctccccagtggcaatttaggtgggttaattta 39509177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 40284008 - 40283948
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||| |||||  |||||  | |||| |||||||||||||||||||||| |||||    
T  40284008 cctcaaggtctaaggtttgattctgcttggtgccaatttaggtgggctaatttaacttctt 40283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 51948534 - 51948594
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| ||||||||||||||||||||  | |||||||||||  ||| ||||||||| |||||    
T  51948534 cctcgaggtctcaggttcaattctctccagtgtcaatttaaatggactaatttaacttctt 51948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 52467551 - 52467583
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  52467551 acccaaggtgtttacaaatgtttcccaacccaa 52467583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 55427217 - 55427169
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| ||||||  ||||| |||||| ||||||||||||||    
T  55427217 aggtctcaggttcgattctccgcggtgccaatttgggtgggctaattta 55427169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 25116595 - 25116502
Alignment:
Q  160 atccttccaataataaaatctcattaccc-aaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa 252  Q
    ||||||| |||||| |||||||| ||||| || ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  25116595 atccttcaaataatgaaatctcactaccctaatgtgtttacaaatgtttcccaacccaataaataaactctcacaaaagacactcaactctaaa 25116502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 15065019 - 15065072
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||||||| ||  |||||||||||| ||||||||||||||    
T  15065019 cctcaaggtctcaggttcaattttccccggtgtcaatttgggtgggctaattta 15065072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 51814543 - 51814601
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||| ||||||  ||||| |||||| ||||||||||||||    
T  51814543 ctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaattta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 47102732 - 47102676
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    ||||||||||| || |||||||| |||||||||||||||| |||||||||||| ||||    
T  47102732 atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 47102676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 6948099 - 6948039
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||||||| |||||||||||| |||||||||||||| || | |||||||| |||||    
T  6948099 cctcgaggtctcatgttcaattctcaccggtgtcaatttagatgagttaatttaacttctt 6948039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 11031366 - 11031311
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||| ||  |||| |||||| |||||||||||||||||||||| ||||    
T  11031366 atccttccaataatgaa--ctcactacccacggtgtttacaaatgtttcccaacccaa 11031311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 12587319 - 12587376
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||| ||||||||||||| ||||||  ||||| |||||||||||||||||||||    
T  12587319 ctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaattta 12587376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 3281911 - 3281967
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  3281911 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 3281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 8281539 - 8281599
Alignment:
Q  177 atctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaaga 238  Q
    |||||| ||||||||||||||||||||| |||||||  ||| ||| |||||||||| |||||    
T  8281539 atctcactacccaaggtgtttacaaatggttcccaacacaagaaa-aaactctcatcaaaga 8281599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 13604515 - 13604459
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  13604515 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 13604459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 16124407 - 16124351
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  16124407 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 16124351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 29652017 - 29652073
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  29652017 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 29652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 31605897 - 31605817
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||||| |||||||||| |     |||||||||||| |||| ||||||  ||||| |||||| ||||||||| ||||    
T  31605897 tggcttgggaccttgaagtgtgctcctc-----ctcaaggtctcaagttcgattctccccggtgccaatttgggtgggctagttta 31605817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 37069971 - 37070027
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | ||||||||||| ||||||||||||| |||||||||||| ||||    
T  37069971 atccttccaatggtgaaatctcattatccaaggtgtttac-aatgtttcccaacccaa 37070027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 47098718 - 47098662
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  47098718 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 47098662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 928174 - 928206
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  928174 acccaaggtgtttacaaatgtttcccaacccaa 928206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 40816709 - 40816658
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  40816709 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 40816658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 14889 - 14978
Alignment:
Q  163 cttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa 252  Q
    ||||||||||||||||||||  ||| ||||| |||||||||||||||||| |||| |||||||||||||  ||||||| ||||| |||||    
T  14889 cttccaataataaaatctcaccaccaaaggtatttacaaatgtttcccaacccaaaaaataaactctcaccaaagacattcaaccctaaa 14978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 23361676 - 23361618
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  23361676 ctcctcctcaaggtctcaggttcaattctctctggtgtcaatttaggtgggctaattta 23361618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 243
Target Start/End: Complemental strand, 31513226 - 31513143
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactc 243  Q
    ||||||||  |||| |||||||| ||  ||||||||||||||||||||| ||| |||| ||||||||||||||  |||||||||    
T  31513226 atccttcctctaatgaaatctcactattcaaggtgtttacaaatgtttctcaacccaagaaataaactctcatcgaagacactc 31513143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 2203519 - 2203599
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     |||||||||||||| |||||||||  ||||| |||||| ||||||||||||||    
T  2203519 tggcttgggacctgggagtgtgctcctc-----ctcaaggtctcagggtcaattctccccggtgccaatttgggtgggctaattta 2203599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 3624607 - 3624686
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| ||     |||||||||||||||| ||||||  ||| |||||||||||||||||||||||    
T  3624607 tggcttgggacctgggagtgtgctcctct-----tcaaggtctcaggttcgattctctccgg-gtcaatttaggtgggctaattta 3624686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 6536547 - 6536627
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||||||||||||||||||||||||   |||| ||||||||||||| |||||||    
T  6536547 tggcttgggacctaggagtgtgctcctc-----ctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaattta 6536627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 19175647 - 19175591
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||| | |||||||| |||||||||||||||| |||||||||||||||||    
T  19175647 atccttccaatagtgaaatctcactacccaaggtgtttac-aatgtttcccaatccaa 19175591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 28783109 - 28783167
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||||| |||| |||||| |||||| |||||| ||||||||||||||    
T  28783109 ctcctcctcaaggtctcatgttcgattctcctcggtgccaatttgggtgggctaattta 28783167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 29858076 - 29858018
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||| ||||||||||||| |||| | |||||| |||||||||||||||||||||    
T  29858076 ctcctcctcgaggtctcaggttcgattcccctcggtgccaatttaggtgggctaattta 29858018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 968389 - 968469
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||| ||||||||||||| ||||||  || || |||||||||||||||||||||    
T  968389 tggcttgggacctgggagtgtgctcctc-----ctcgaggtctcaggttcgattctctccgatgccaatttaggtgggctaattta 968469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 3058068 - 3058023
Alignment:
Q  53 caaggtctcaggttcaattctcatcggtgtcaatttaggtgggcta 98  Q
    ||||||||||||||| |||||| |||| ||||||||||||||||||    
T  3058068 caaggtctcaggttcgattctcttcggcgtcaatttaggtgggcta 3058023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 19703514 - 19703455
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaa 104  Q
    |||| |||||||||||||||||| ||||||    ||||||||| ||||||||||||||||    
T  19703514 ctcctcctcaaggtctcaggttcgattctccctagtgtcaattaaggtgggctaatttaa 19703455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 7493051 - 7493010
Alignment:
Q  175 aaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  7493051 aaatctcactacccaaggtgtttac-aatgtttcccaatccaa 7493010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 18546389 - 18546331
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||| ||||||||||||| ||||||| ||| ||||||||||||| | |||||||    
T  18546389 ctcctcctcgaggtctcaggttcgattctcaccggcgtcaatttaggtgagataattta 18546331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 8867482 - 8867535
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||| |||||| ||  ||||||| |||||||| |||||||    
T  8867482 cctcaaggtctcaggttccattctcctcaatgtcaatgtaggtgggttaattta 8867535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 10287529 - 10287582
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||||| |   | ||||||||||||||||||||||    
T  10287529 cctcgaggtctcaggttcaattctcctttatatcaatttaggtgggctaattta 10287582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 16852367 - 16852447
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||| ||||||||||||| |||||| |  ||| |||||||||||||||| ||||    
T  16852367 tggcttgggacctgggagtgtgctcctc-----ctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctatttta 16852447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 19752287 - 19752246
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaa 201  Q
    ||||||||||| || |||||||| ||||||||||||||||||    
T  19752287 atccttccaatgatgaaatctcactacccaaggtgtttacaa 19752246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 26688892 - 26688972
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||||||||||| |     |||||||||||||||||| ||||     |||||||||| ||||||||| ||||    
T  26688892 tggcttgggaccttggagtgtgctcctc-----ctcaaggtctcaggttcagttcttcctagtgtcaatttgggtgggctagttta 26688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 35826384 - 35826425
Alignment:
Q  69 attctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||| |||||||||||||||||| ||||||||| |||||    
T  35826384 attctcaccggtgtcaatttaggtggactaatttaacttctt 35826425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 43292458 - 43292405
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||| |||||||||||||||||  |||||||||||||| ||  ||||||||    
T  43292458 cctcaagatctcaggttcaattctctccggtgtcaatttagatgaactaattta 43292405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 3524450 - 3524399
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctc 74  Q
    |||||||||||||||||||||||||| |     |||||||||| |||||||||||||    
T  3524450 tggcttgggaccttggagtgtgctcctc-----ctcaaggtcttaggttcaattctc 3524399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 7347896 - 7347944
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||    |||||||||||||||||||||||||    
T  7347896 aggtttcaggttcaattctctcttgtgtcaatttaggtgggctaattta 7347944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 11492090 - 11492042
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||| |||||| |||||| || |||||||||| ||||||||||||||    
T  11492090 aggtcttaggttcgattctcttcagtgtcaatttgggtgggctaattta 11492042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 22786063 - 22786007
Alignment:
Q  54 aaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||| ||||||||||| | |||| |||||||||||  |||||||| ||||||    
T  22786063 aaggtctcatgttcaattctctttggtgccaatttaggtgaactaatttagtttctt 22786007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 26403122 - 26403071
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  26403122 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 26403071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 30291577 - 30291545
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  30291577 acccaaggtgtttacaaatgtttcccaacccaa 30291545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 35690091 - 35690035
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatt 101  Q
    |||| |||||||||||||||||| ||||||   |||||||||||| || ||||||||    
T  35690091 ctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaagtaggctaatt 35690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 40591783 - 40591843
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||||| ||||||||||  |||||| ||| || ||||||||||||  ||||||||||||||    
T  40591783 cctcaaagtctcaggtttgattctcttcgatgccaatttaggtggagtaatttaatttctt 40591843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 43533741 - 43533681
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||| |||||||||||  ||| |  ||||| ||||| |||||||||||||||    
T  43533741 cctcaaggtctcacgttcaattctccccggcgctaatttgggtggactaatttaatttctt 43533681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 43594340 - 43594280
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||||||||||||||||| ||||||    |||||||||| | |||||||||||| ||||||    
T  43594340 cctcaaggtctcaggttcgattctctctagtgtcaatttggatgggctaatttagtttctt 43594280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 54990729 - 54990809
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||| ||||||| |     ||||||||||||||||| |||||| ||| || |||||||||||||||||||||    
T  54990729 tggcttgggaccttggagcgtgctcctc-----ctcaaggtctcaggttcgattctcctcgatggcaatttaggtgggctaattta 54990809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 5366190 - 5366103
Alignment:
Q  175 aaatctcattacccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa-ttatctcct 261  Q
    |||||| | |||||||||||||||||||||||| ||||  ||| |||||||||||||  |||||| |||||| ||||| |||||||||    
T  5366190 aaatcttactacccaaggtgtttacaaatgttttccaactcaagaaataaactctcaccaaagactctcaaccctaaagttatctcct 5366103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 14186696 - 14186748
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggct 97  Q
    |||| |||||||||||||||||| ||||||  |||||||||||||||||||||    
T  14186696 ctcctcctcaaggtctcaggttcgattctctccggtgtcaatttaggtgggct 14186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 17035040 - 17035100
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||||||||||||||||| |||||| ||||| ||||||| ||||| ||||||||| |||||    
T  17035040 cctcaaggtctcaggttcgattctcctcggtatcaatttgggtggactaatttaacttctt 17035100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 21156640 - 21156696
Alignment:
Q  167 caataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaata 223  Q
    ||||||| ||||||||||| | ||||||||||| ||||||||||||||||| |||||    
T  21156640 caataatgaaatctcattaactaaggtgtttaccaatgtttcccaatccaaaaaata 21156696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 8126834 - 8126890
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    ||||||||||| || |||||||| |||||||||||||||| |||||||||||| ||||    
T  8126834 atccttccaatgatgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 8126890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 19716224 - 19716304
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||| ||||||||||||| |     ||||||||||| ||||| ||||||  ||||| |||||| ||||||||||||||    
T  19716224 tggcttgggaccatggagtgtgctcctc-----ctcaaggtctctggttcgattctccccggtgacaatttgggtgggctaattta 19716304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 26928481 - 26928425
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | ||||||||||||||||||||||||| |||||||||||| ||||    
T  26928481 atccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaa 26928425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 1314002 - 1314034
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||||||||    
T  1314002 acccaaggtgtttacaaatgtttcccaatccaa 1314034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 104
Target Start/End: Complemental strand, 24353406 - 24353349
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaa 104  Q
    |||| |||||||||||||||||||||| |  || ||||||||||||||||| ||||||||    
T  24353406 ctcctcctcaaggtctcaggttcaatttt--tcagtgtcaatttaggtgggttaatttaa 24353349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 36015510 - 36015554
Alignment:
Q  58 tctcaggttcaattctcatcggtgtcaatttaggtgggctaattt 102  Q
    |||||||| | |||||| |||||||||||||||||||||||||||    
T  36015510 tctcaggtacgattctcttcggtgtcaatttaggtgggctaattt 36015554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 52770000 - 52769952
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||| |  |||||||||||||||||||||||||    
T  52770000 aggtctcaggttcgattctctttagtgtcaatttaggtgggctaattta 52769952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 1736186 - 1736128
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaata 219  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||||    
T  1736186 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaata 1736128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 31714371 - 31714422
Alignment:
Q  51 ctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattt 102  Q
    |||||||||||| |||| ||||||||| |||||||||| |||||| ||||||    
T  31714371 ctcaaggtctcaagttcgattctcatcagtgtcaatttcggtgggttaattt 31714422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 33899663 - 33899721
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||| ||||||||||||| |||||| | ||||||||||| |||| |||||||||    
T  33899663 ctcctcctctaggtctcaggttcgattctctttggtgtcaatttgggtgtgctaattta 33899721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 16264553 - 16264609
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  16264553 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 16264609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 27986338 - 27986282
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  27986338 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 27986282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 35925682 - 35925738
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  35925682 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 35925738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 36029297 - 36029353
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  36029297 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 36029353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 40592664 - 40592608
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  40592664 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 40592608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 47923786 - 47923730
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  47923786 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 47923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 3715884 - 3715833
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  3715884 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 3715833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 8170727 - 8170786
Alignment:
Q  51 ctcaaggtctcaggttcaattctcatc-ggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||||||| ||| || || ||||||||||| ||||||||||||||| |||||    
T  8170727 ctcaaggtctcaggttcgatt-tcctctggtgtcaatttgggtgggctaatttaaattctt 8170786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 10499126 - 10499078
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| ||||||  || ||||||||| ||||||||||||||    
T  10499126 aggtctcaggttcgattctctccgatgtcaatttgggtgggctaattta 10499078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 18552767 - 18552716
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  18552767 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 18552716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 29100407 - 29100459
Alignment:
Q  200 aaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa 252  Q
    ||||||||||||| | || |||||||||||||  ||||||||||||| |||||    
T  29100407 aaatgtttcccaacctaagaaataaactctcaccaaagacactcaaccctaaa 29100459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 29196584 - 29196616
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  29196584 acccaaggtgtttacaaatgtttcccaacccaa 29196616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 35981713 - 35981665
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtg 93  Q
    |||| ||| ||||||| ||||||||||||| || |||||||||||||||    
T  35981713 ctcctccttaaggtcttaggttcaattctcctccgtgtcaatttaggtg 35981665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 44700675 - 44700707
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  44700675 acccaaggtgtttacaaatgtttcccaacccaa 44700707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 30518022 - 30517926
Alignment:
Q  160 atccttccaataataaaatctcatt----acccaaggtgtttacaaatgtttcccaatccaataaataaactctcattaaagacactcaactctaaa 252  Q
    |||||||||||||| |||||||| |    ||||||  | ||||||||||||||| |||| || |||||||||||||  |||||||||||||||||||    
T  30518022 atccttccaataatgaaatctcactcactacccaaaatatttacaaatgtttcctaatctaagaaataaactctcaccaaagacactcaactctaaa 30517926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 24334052 - 24333994
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||||||||||| ||||| |||||| ||||||||| ||||    
T  24334052 ctcctcctcaaggtctcaggttcaattctcaccggtgccaatttgggtgggctagttta 24333994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 8597794 - 8597716
Alignment:
Q  24 gggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||| ||||||| ||||| ||| ||||||||||||| |||||||||||  | ||| |||||| ||||||||||||||    
T  8597794 gggacctgggagtgtcctccc-tcctcctcaaggtctcaagttcaattctctccagtgccaatttgggtgggctaattta 8597716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 5017389 - 5017333
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | ||||||||||||||||||||||||| |||||||||||| ||||    
T  5017389 atccttccaatggtgaaatctcattacccaaggtgtttac-aatgtttcccaacccaa 5017333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 22963903 - 22963959
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||||||||    
T  22963903 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaatccaa 22963959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 23824490 - 23824434
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||||||||    
T  23824490 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaatccaa 23824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 24507585 - 24507498
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||||||||| |||||| |     ||||||||||  ||||||||||||  |||| |||||||||||||| || ||||| |||||    
T  24507585 tggcttgggaccttggagtttgctcctc-----ctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttctt 24507498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 28841463 - 28841527
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttct 109  Q
    |||| ||||||||||||| |||| ||||||  |||||||||||||| | |||||||||| |||||    
T  28841463 ctcctcctcaaggtctcaagttcgattctctccggtgtcaatttagattggctaatttagtttct 28841527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 31936779 - 31936837
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaata 219  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||||    
T  31936779 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaata 31936837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 32006410 - 32006467
Alignment:
Q  52 tcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||| | |||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  32006410 tcaaggttttaggttcgattctcatcg-tgtcaatttagatggactaatttaatttctt 32006467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 5572132 - 5572080
Alignment:
Q  164 ttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||| | |||||||| |||||||||||||||| |||||||||||| ||||    
T  5572132 ttccaatagtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 5572080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 5757371 - 5757315
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  5757371 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 5757315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 7389059 - 7389022
Alignment:
Q  51 ctcaaggtctcaggttcaattctcatcggtgtcaattt 88  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  7389059 ctcaaggtctcaggttcaattctccccggtgtcaattt 7389022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 18233050 - 18233102
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaat 213  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||||    
T  18233050 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaat 18233102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 28363986 - 28364051
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||||||||||||| ||| ||| ||   ||||||||||| | |||||||||||||||||||    
T  28363986 ctcctcctcaaggtctcagattcgattatctctggtgtcaatttggatgggctaatttaatttctt 28364051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 21801237 - 21801186
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  21801237 atccttccaatgttgaaatctcactacccaaggtgtttac-aatgtttcccaa 21801186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 24435864 - 24435813
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  24435864 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 24435813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 33721447 - 33721400
Alignment:
Q  164 ttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||| |||||||| |||  ||||||||||||||||||||||||    
T  33721447 ttccaataatgaaatctcactaca-aaggtgtttacaaatgtttcccaa 33721400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 30883247 - 30883171
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaa 99  Q
    ||||||||||||| |||||||||||| |     |||||||||||| |||||||||||| | |||||||||| ||||||||||    
T  30883247 tggcttgggacctgggagtgtgctcctc-----ctcaaggtctcaagttcaattctcaccagtgtcaatttgggtgggctaa 30883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 5611353 - 5611409
Alignment:
Q  167 caataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaataaata 223  Q
    ||||||| ||||||||||| | ||||||||||| ||||||||||||||||| |||||    
T  5611353 caataatgaaatctcattaactaaggtgtttaccaatgtttcccaatccaaaaaata 5611409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 35705042 - 35705093
Alignment:
Q  52 tcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||| ||||||  |||||||||||| ||||||||||||||    
T  35705042 tcaaggtctcaggttcgattctccccggtgtcaatttgggtgggctaattta 35705093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 16457837 - 16457917
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||||||||||| |     |||||||||||| |||||||||||  ||||| ||||||  |||||||| ||||    
T  16457837 tggcttgggaccttggagtgtgctcctc-----ctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagttta 16457917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9353225 - 9353169
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  9353225 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 9353169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 11916865 - 11916809
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  11916865 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 11916809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 28832461 - 28832517
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  28832461 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 28832517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 36932241 - 36932185
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  36932241 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 36932185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 43241699 - 43241650
Alignment:
Q  55 aggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaa 104  Q
    |||||||||||||||||||| ||| || |||||||| ||| |||||||||    
T  43241699 aggtctcaggttcaattctcttcgatgccaatttagctggactaatttaa 43241650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 43442245 - 43442310
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||||||||||||||||| ||||||   | ||||||||| | |||||||||||| ||||||    
T  43442245 ctcctcctcaaggtctcaggttcgattctctctgttgtcaatttggatgggctaatttagtttctt 43442310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 110
Target Start/End: Complemental strand, 17877154 - 17877122
Alignment:
Q  78 ggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||||||||||||||||| |||||    
T  17877154 ggtgtcaatttaggtgggctaatttaacttctt 17877122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 4572317 - 4572266
Alignment:
Q  52 tcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||| ||||||  |||||||||||| ||||||||||||||    
T  4572317 tcaaggtctcaggttcgattctctccggtgtcaatttgggtgggctaattta 4572266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 279981 - 279923
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||| |||||||||||||||||||||  ||||| |||||| ||||||||||||||    
T  279981 ctcctccttaaggtctcaggttcaattctctccggtgccaatttgggtgggctaattta 279923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 41519291 - 41519234
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||||||||||  ||||| || |||||||||||||||||||||||||    
T  41519291 ctcctcctcaaggtctcaggttcgcttctc-tctgtgtcaatttaggtgggctaattta 41519234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 2882999 - 2883052
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggcta 98  Q
    |||| |||||||||||||||||||||||||   |||| ||||||||||||||||    
T  2882999 ctcctcctcaaggtctcaggttcaattctctctggtggcaatttaggtgggcta 2883052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 15137602 - 15137667
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||||||||||||||||  ||||||   ||||||||||| |||||||||||||| ||||||    
T  15137602 ctcctcctcaaggtctcaggttagattctctctggtgtcaatttgggtgggctaatttagtttctt 15137667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 20335858 - 20335793
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||| ||||||||||||| ||||||| || ||||||||| | ||||||||||||| |||||    
T  20335858 ctcctcctcgaggtctcaggttcgattctcaccgatgtcaatttggatgggctaatttaacttctt 20335793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 21989112 - 21989168
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  |||||||||| |||||||||||||||| |||||||||||| ||||    
T  21989112 atccttccaatggtaaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 21989168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38374648 - 38374568
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||| ||||||||||| |     |||||||||| |||||| ||||||  ||||| |||||||||||||||| ||||    
T  38374648 tggcttgggaccttagagtgtgctcctc-----ctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagttta 38374568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 41487413 - 41487466
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||| |||||   ||||| |||||||||||||||||||||    
T  41487413 cctcaaggtctcaggttcgattcttcccggtgccaatttaggtgggctaattta 41487466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 19553502 - 19553560
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||| |||||||||||||  ||||  |||||||||||||||| ||||    
T  19553502 ctcctcctcaaggtcttaggttcaattctccccggttccaatttaggtgggctacttta 19553560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 21558177 - 21558235
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||||||||||||||||| ||||||   |||| ||||||||||||| |||||||    
T  21558177 ctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaattta 21558235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 42712007 - 42712065
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| ||||||||||||| |||| ||||||    |||||||||||||||||||||||||    
T  42712007 ctcctcctcaaggtctcatgttcgattctccctagtgtcaatttaggtgggctaattta 42712065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 2479540 - 2479596
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  2479540 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 2479596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 9183218 - 9183153
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||| |||||| ||||||||||| ||| ||   ||||||||||| |||||||||||||| ||||||    
T  9183218 ctcctcctcaaagtctcaggttcgattatctctggtgtcaatttgggtgggctaatttagtttctt 9183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9185067 - 9185011
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  9185067 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 9185011  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 9189900 - 9189844
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  9189900 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 9189844  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 20284293 - 20284349
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  20284293 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 20284349  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 30579389 - 30579442
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||||||||||||||||| ||| ||   |||| |||||||||||||||||||||    
T  30579389 cctcaaggtctcaggttcgattttctctggtgccaatttaggtgggctaattta 30579442  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 5579283 - 5579204
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattt 102  Q
    |||||||||||||||||||||||||| |     ||||||||||||||||  | ||||  ||||| |||||| |||||| ||||||    
T  5579283 tggcttgggaccttggagtgtgctcctc-----ctcaaggtctcaggtttgactctccccggtgccaatttgggtgggataattt 5579204  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 29160009 - 29160060
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  29160009 atccttccaatgttgaaatctcactacccaaggtgtttac-aatgtttcccaa 29160060  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 29385792 - 29385717
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggcta 98  Q
    ||||||||||| |||||||||||||| |     ||||||||||||||||  |||||| | |||| |||||| |||||||||    
T  29385792 tggcttgggactttggagtgtgctcctc-----ctcaaggtctcaggtttgattctctttggtgccaatttgggtgggcta 29385717  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 30217928 - 30217984
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatt 101  Q
    |||| ||||||||||||| |||| |||||| || |||||||| || |||||||||||    
T  30217928 ctcctcctcaaggtctcaagttcgattctcttcagtgtcaatataagtgggctaatt 30217984  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 36146605 - 36146637
Alignment:
Q  185 acccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||||||||||||||||||| ||||    
T  36146605 acccaaggtgtttacaaatgtttcccaacccaa 36146637  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 41519131 - 41519079
Alignment:
Q  51 ctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| ||| ||| ||  |||||||||||| ||||||||||||||    
T  41519131 ctcaaggtctcagattcgattatctccggtgtcaatttgggtgggctaattta 41519079  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 46516198 - 46516147
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  46516198 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 46516147  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 48983755 - 48983695
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    |||||||||||||||||| |||| |    |||||||||| ||||||||||||||| |||||    
T  48983755 cctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggctaatttaacttctt 48983695  T

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Target: scaffold0337 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 1780 - 1867
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||||||||||||||| |||||| |     ||||||||||  ||||||||||||  |||| |||||||||||||| || ||||| |||||    
T  1780 tggcttgggaccttggagtttgctcctc-----ctcaaggtctagggttcaattctctccggtatcaatttaggtgggttagtttaacttctt 1867  T

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Target: scaffold0115 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 42686 - 42626
Alignment:
Q  50 cctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaatttaatttctt 110  Q
    ||||||| ||||| |||| ||||||   ||||||||||||||||||||||||||| |||||    
T  42686 cctcaagatctcaagttcgattctctatggtgtcaatttaggtgggctaatttaacttctt 42626  T

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Target: scaffold0258 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 15372 - 15292
Alignment:
Q  18 tggcttgggaccttggagtgtgctcccctccccctcaaggtctcaggttcaattctcatcgg-tgtcaatttaggtgggctaattta 103  Q
    ||||||||||||| |||||||||||| |     ||| ||||||||||||| |||||| |||| || |||||||||||||||||||||    
T  15372 tggcttgggacctgggagtgtgctcctc-----ctcgaggtctcaggttcgattctc-tcggatgccaatttaggtgggctaattta 15292  T

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Target: scaffold0176 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 17470 - 17511
Alignment:
Q  175 aaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||| |||||||||||||||| |||||||||||||||||    
T  17470 aaatctcactacccaaggtgtttac-aatgtttcccaatccaa 17511  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 41660 - 41602
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggctaattta 103  Q
    |||| |||| ||||||||||||||||||||   | ||||||||| ||||||||||||||    
T  41660 ctcctcctcgaggtctcaggttcaattctctctgatgtcaatttgggtgggctaattta 41602  T

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Target: scaffold0140 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8310 - 8254
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  8310 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 8254  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 43854 - 43798
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  43854 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 43798  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 133172 - 133116
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaatccaa 217  Q
    |||||||||||  | |||||||| |||||||||||||||| |||||||||||| ||||    
T  133172 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaacccaa 133116  T

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Target: scaffold0194 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 13073 - 13021
Alignment:
Q  45 ctccccctcaaggtctcaggttcaattctcatcggtgtcaatttaggtgggct 97  Q
    |||| |||||||||||||||||| ||||||  || ||||||||| ||||||||    
T  13073 ctcctcctcaaggtctcaggttcgattctctccgatgtcaatttgggtgggct 13021  T

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Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 10935 - 10986
Alignment:
Q  160 atccttccaataataaaatctcattacccaaggtgtttacaaatgtttcccaa 212  Q
    |||||||||||  | |||||||| |||||||||||||||| ||||||||||||    
T  10935 atccttccaatggtgaaatctcactacccaaggtgtttac-aatgtttcccaa 10986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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