View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3400_high_3 (Length: 235)
Name: NF3400_high_3
Description: NF3400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3400_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45451355 - 45451134
Alignment:
| Q |
1 |
tacatttgaagaagagaaatcattgtgacatcgtgatttttgttgacactctagtgttcctttgcagaccgaccgagatcctaccaaattcattgtgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45451355 |
tacatttgaagaagagaaatcattgtgacatcatgatttttgttgacactctagtgttcctttgcagaccgaccgagatcctaccaaattcattgtgaat |
45451256 |
T |
|
| Q |
101 |
ccaaacacacatttagtatggtgggtctgatggggcaaccataggttcagctgcaaactgcacagagctaaatggctgtggaggttcagctacaaactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45451255 |
ccaaacacacatttagtatggtgggtctgatggggcaaccataggttcagctgcaaactgcacagagctaaatggctgtggaggttcagctacaaactgc |
45451156 |
T |
|
| Q |
201 |
actgaatgcacaggtcctggtg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
45451155 |
actgaatgcacaggtcctggtg |
45451134 |
T |
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