View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3400_low_2 (Length: 241)
Name: NF3400_low_2
Description: NF3400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3400_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32744886 - 32744662
Alignment:
| Q |
1 |
catcttatgtttcagttatcattgggttagcagtaattctttgggttaattctcattggtgtagggcatggttccattatgttgatttgtgtatatttta |
100 |
Q |
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| T |
32744886 |
catcttatgtttcagttatcattgggttagcagtaattctttgggttaattctcattggtgtagggcatggttccattatgttgatttgtgtatatttta |
32744787 |
T |
|
| Q |
101 |
ttgcttcacaaggtgtttcaagaatgttttccattagtgatatagctaaagattggaagaactttgtaataactaagtaactagataatgagtattccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32744786 |
ttgcttcacaaggtgtttcaagaatgttttccattaatgatatagctaaagattggaagaactttgtaataactaagtaactagataatgagtattccat |
32744687 |
T |
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| Q |
201 |
ctgagtaaataattgaagtgaaagt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
32744686 |
ctgagtaaataattgaagtgaaagt |
32744662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4911878 - 4911654
Alignment:
| Q |
1 |
catcttatgtttcagttatcattgggttagcagtaattctttgggttaattctcattggtgtagggcatggttccattatgttgatttgtgtatatttta |
100 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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| T |
4911878 |
catcttatgttacagttgtcattgggttagcagtaattctttgggttaattctcattggtgtagggtttggtttcgttatgttgatttgtgtatatttta |
4911779 |
T |
|
| Q |
101 |
ttgcttcacaaggtgtttcaagaatgttttccattagtgatatagctaaagattggaagaactttgtaataactaagtaactagataatgagtattccat |
200 |
Q |
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| T |
4911778 |
ttgcttctcaaggtgtttcaagaatgttttccattagtgatttggctaaagatttgaagaactttgtaataactaagtaactagataatgagcatttcat |
4911679 |
T |
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| Q |
201 |
ctgagtaaataattgaagtgaaagt |
225 |
Q |
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|| |||||||||||||| ||||||| |
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| T |
4911678 |
cttagtaaataattgaaatgaaagt |
4911654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 36 - 172
Target Start/End: Complemental strand, 2125281 - 2125145
Alignment:
| Q |
36 |
attctttgggttaattctcattggtgtagggcatggttccattatgttgatttgtgtatattttattgcttcacaaggtgtttcaagaatgttttccatt |
135 |
Q |
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|||||||||||||||||||||||||| | ||| |||||| ||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||||||| |
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| T |
2125281 |
attctttgggttaattctcattggtgcatggcttggttctattatgttgatatgtgtatattttattgcttctcaaggtgttttaagaatgctttccatt |
2125182 |
T |
|
| Q |
136 |
agtgatatagctaaagattggaagaactttgtaataa |
172 |
Q |
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||||| || |||||||||||||| ||||| ||||||| |
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| T |
2125181 |
agtgacattgctaaagattggaaaaacttcgtaataa |
2125145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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