View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3400_low_4 (Length: 226)
Name: NF3400_low_4
Description: NF3400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3400_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 32745054 - 32745270
Alignment:
| Q |
1 |
gttggaattgtaccagaaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32745054 |
gttggaattgtaccagaaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcaaattattgt |
32745153 |
T |
|
| Q |
101 |
aagaaaggtctaaactctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32745154 |
aagaaaggtctaaactctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctct |
32745253 |
T |
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| Q |
201 |
tagttctccaatctctg |
217 |
Q |
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||||||||||||||||| |
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| T |
32745254 |
tagttctccaatctctg |
32745270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 4912046 - 4912262
Alignment:
| Q |
1 |
gttggaattgtaccagaaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgt |
100 |
Q |
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||||||| | ||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
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| T |
4912046 |
gttggaactctaccagagaatttgttatatgagacattgaatatagctaaagagtataaattagtcaggttttgaggtaaggcaccactcaaattattgt |
4912145 |
T |
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| Q |
101 |
aagaaaggtctaaactctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctct |
200 |
Q |
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| T |
4912146 |
aagaaaggtctaaactctcaatatttatcaaattgggaaaggttcctggtatcgatcctgagaatcgattgtgcgaaagattcaaggctttaatatctct |
4912245 |
T |
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| Q |
201 |
tagttctccaatctctg |
217 |
Q |
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||||||||| ||||||| |
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| T |
4912246 |
tagttctccgatctctg |
4912262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2125484 - 2125702
Alignment:
| Q |
1 |
gttggaattgtaccagaaaatttgttgtatgagacattgaatatggctaaagagtataaatccgtcaggttttgaggtatggcaccactcagattattgt |
100 |
Q |
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||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| |
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| T |
2125484 |
gttggaattttcccagacaatttgttgtatgagacattgaatatggctaaagagtataaatcatttaggttttgaggtattttaccactcaaattattgt |
2125583 |
T |
|
| Q |
101 |
aagaaaggtctaaactctcgatatttatcaaattggaaaaggttcctggtatcgatcctgataatcgattgcgcgaaagattcaaagcaataatttctct |
200 |
Q |
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|||||||||||||| || || |||||||||||||||||| || ||||||| ||||||||||| |||||| |||| |||||||| ||||| ||||||| |
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| T |
2125584 |
tggaaaggtctaaactttcaatgtttatcaaattggaaaagctttctggtattgatcctgataaccgattgtgcgagagattcaaggcaatgatttctcg |
2125683 |
T |
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| Q |
201 |
tagttctccaatctctgct |
219 |
Q |
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||||||||| ||||||||| |
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| T |
2125684 |
tagttctccgatctctgct |
2125702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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