View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3401_low_3 (Length: 251)
Name: NF3401_low_3
Description: NF3401
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3401_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 8900481 - 8900241
Alignment:
| Q |
1 |
tttaattttatggattgtaaagatgaacttttttatagcaccgacatttcagattgaagagatgttggagtttaattcggattcctcgtagtcgaggaca |
100 |
Q |
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| T |
8900481 |
tttaattttatggattgtaaagatgaacttttttatagcaccgatatttcagattgaagagatgttggagtttaattcggagtcctcgtagtcgaggacc |
8900382 |
T |
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| Q |
101 |
ccggttactgattgatcttgacggtccaaaacaaatatgtgcacattttaagttagattttataattgaaaatactgagtttgaatttggactgtctcat |
200 |
Q |
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| T |
8900381 |
ccggttactgattgatcttgacggtccaaaacaaatgtgtgcacattttaagttatattttataattgaaaatactgagtttgaatttggactgtctcat |
8900282 |
T |
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| Q |
201 |
cttgatcgaactgccactgatgtgccaatgcgggtcctttg |
241 |
Q |
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| T |
8900281 |
cttgatcgaactgccactgatgtgccaatgcgggtcctttg |
8900241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 19377296 - 19377360
Alignment:
| Q |
157 |
attttataattgaaaatactgagtttgaatttggactgtctcatcttgatcgaactgccactgat |
221 |
Q |
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| T |
19377296 |
attttataatttaaaatactgagattaaatttgaaccgtctgatcatgatcaaactgtcactgat |
19377360 |
T |
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