View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3402_high_10 (Length: 329)
Name: NF3402_high_10
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 8893992 - 8894297
Alignment:
| Q |
1 |
actcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtctggtggtgaagttgcattgaggccatagatagcagcacttgtga |
100 |
Q |
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| T |
8893992 |
actcgcttgtttggattccttatgaagattgtgaattgcattgagattgacatgtctggcggtgaagtagcattgaggctatagattgcagcacttgtga |
8894091 |
T |
|
| Q |
101 |
ctgtgatgtgaggttttgtgggatggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacg |
200 |
Q |
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| T |
8894092 |
ctgtgatatgaggttttgagggatggtatgcaagccataagatgaggattataatgccaagtacaaggaagaagattgtgatgcatatgcagtgttcacg |
8894191 |
T |
|
| Q |
201 |
ttttggagcattaggtactctataacgaggaaccatacatttgtcttccatgggatattgatgacgttgttgttgacgtggttgttccatttcggggtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
8894192 |
ttttggagcattaggtactctataacgaggaaccatacctttgtgttccatgggatattgatgtcgttgttgttgtcgtggttgttccatttcgggatat |
8894291 |
T |
|
| Q |
301 |
tgatga |
306 |
Q |
| |
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|||||| |
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| T |
8894292 |
tgatga |
8894297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 8894285 - 8894339
Alignment:
| Q |
252 |
gggatattgatgacgttgttgttgacgtggttgttccatttcggggtattgatga |
306 |
Q |
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| T |
8894285 |
gggatattgatgacgttgttgttgacgtggttgttccatttcggggtattgatga |
8894339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 212350 - 212389
Alignment:
| Q |
143 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
182 |
Q |
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| T |
212350 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
212389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 239904 - 239865
Alignment:
| Q |
143 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
182 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
239904 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
239865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 725973 - 726012
Alignment:
| Q |
143 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
182 |
Q |
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|
| T |
725973 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
726012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 793259 - 793220
Alignment:
| Q |
143 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
182 |
Q |
| |
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|||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
793259 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
793220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 182
Target Start/End: Original strand, 798474 - 798513
Alignment:
| Q |
143 |
tgaggattataatgccaagtacgaggaagaagattgtgat |
182 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |
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| T |
798474 |
tgaggagtataatgccaagtaagaggaagaagattgtgat |
798513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 24281855 - 24281937
Alignment:
| Q |
124 |
tggtatgcaagccataagatgaggattataatgccaagtacgaggaagaagattgtgatgcatatgcagtgttcacgttttgg |
206 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| | |||||||||||| |
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| T |
24281855 |
tggtatgcaagccataagatgagcagtataatgccaagtaagaggaagaagattgtgatgcatatgcaatattcacgttttgg |
24281937 |
T |
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