View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3402_high_11 (Length: 325)
Name: NF3402_high_11
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 119 - 315
Target Start/End: Complemental strand, 30762256 - 30762060
Alignment:
| Q |
119 |
gaaaaatttccacatcttacannnnnnnccatcatagaatatttatcagttaaaatttgaaaacacaatgctaaatattctatacattttctatgctaaa |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30762256 |
gaaaaatttccacatcttacatttttttccatcatagaatatttatcagttaaaatttgaaaacacaatgctaaatattctatacattttctatgctaaa |
30762157 |
T |
|
| Q |
219 |
tatccagatttaatttccattcaagatattttgttttgattccaatctatcatcaatttataatataaaatgatatttataatatcatctgtctctg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30762156 |
tatccagatttaatttccattcaagatattttgttttgattccaatctatcatcaatttataatataaaatgatatttataatatcacctgtctctg |
30762060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30762374 - 30762330
Alignment:
| Q |
1 |
acacattcatggatgatcaacatagttgtttgcctatttagagac |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30762374 |
acacattcatggatgatcaacatagttgtttgcctatttagagac |
30762330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 21139728 - 21139669
Alignment:
| Q |
152 |
atagaatattt-atcagttaaaatttgaaaacacaatgctaaatattctatacattttct |
210 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
21139728 |
atagaatattttatcaattaaaatttgaaaacgcaatgctaaatatcatatacattttct |
21139669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 296
Target Start/End: Complemental strand, 21139307 - 21139251
Alignment:
| Q |
245 |
tattttgttttgattccaatcta-----tcatcaatttataatataaaatgatattt |
296 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
21139307 |
tattttgatttgattccaatctaatccatcatcaatttataatataaaatgatattt |
21139251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 28444780 - 28444712
Alignment:
| Q |
223 |
cagatttaatttccattcaagatattttgttttgattccaatctatcatca--atttataatataaaat |
289 |
Q |
| |
|
|||||| ||||| |||| ||| ||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
28444780 |
cagattcaattttcatttaaggtattttgttttgattccaatctatcatcatcaattataatataaaat |
28444712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 21893745 - 21893692
Alignment:
| Q |
152 |
atagaatattt-atcagttaaaatttgaaaacacaatgctaaatattctataca |
204 |
Q |
| |
|
||||||||||| |||| ||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
21893745 |
atagaatattttatcaattaaaatttgaaattacaatgctaaatatcctataca |
21893692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University