View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3402_high_14 (Length: 306)
Name: NF3402_high_14
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 42163603 - 42163890
Alignment:
| Q |
5 |
gagaagcataggtatgaatgaggggacttttccatgacaaggcgagcaagtgagacagggtttttcacggtggtaacaccagatacagcaccacatcttc |
104 |
Q |
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| T |
42163603 |
gagaagcctaggtatgaatgaggggacttttccatgacaaggcgagcaagtgagacagggtttttcacggtggtaacaccagatacagcaccacatcttc |
42163702 |
T |
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| Q |
105 |
tctttgtaccatccatgatgctagcctccatttcaactgttccttttgctgtcaaagcagatccacgcccagaattgaacaggggatttgtttccagttc |
204 |
Q |
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| T |
42163703 |
tctttgtaccatccattatgctagcctccatttcaactgttccttttgctgtcaaagcagatccacgcccagaattgaacaggggatttgtttccagttc |
42163802 |
T |
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| Q |
205 |
tctcacctgtcaaaaaagagactccaaatcattaaacatgattaacaaatgacttaatgaagcaaaaatcttgttattgttttgtttt |
292 |
Q |
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| T |
42163803 |
tctcacctgtcaaaaaagagactccaaatcattaaacatgattaacaaatgacttaatgaagcaaaaatcttgttattgttttttttt |
42163890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 212
Target Start/End: Original strand, 5480656 - 5480776
Alignment:
| Q |
92 |
gcaccacatcttctctttgtaccatccatgatgctagcctccatttcaactgttccttttgctgtcaaagcagatccacgcccagaattgaacaggggat |
191 |
Q |
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| T |
5480656 |
gcaccgcatcgtctttttggtccatccattatgctagcctccatttccaccgttcctttttccgtcagggcagatccacgacccgaattgaatagtggat |
5480755 |
T |
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| Q |
192 |
ttgtttccagttctctcacct |
212 |
Q |
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| T |
5480756 |
ccgtttccaattccctcacct |
5480776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 47170742 - 47170573
Alignment:
| Q |
14 |
aggtatgaatgaggggacttttccatgacaaggcgagcaagtgagacagggtttttcacggtggtaacaccagatacagcaccacatcttctctttgtac |
113 |
Q |
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| T |
47170742 |
aggtaggaatgaggggatttttccatgacaagacgagcaagagagattggatttttcacggtggaaacaccagatacagcaccacatcttctcttggtac |
47170643 |
T |
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| Q |
114 |
catccatgatgctagcctccatttcaactgttccttttgctgtcaaagcagatccacgcccagaattgaa |
183 |
Q |
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| T |
47170642 |
catccatgatactagcctccatttccaccgttccttttgctgtcagagcagatccacggccagaattgaa |
47170573 |
T |
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