View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3402_high_1_N (Length: 533)
Name: NF3402_high_1_N
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 592498 - 591993
Alignment:
| Q |
1 |
atcatggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
592498 |
atcatggtataataatggtatcaaacttctgagacttgattgtttgttactttatgttgataattgtaaattcctctcttgcagctttctttggctgtgt |
592399 |
T |
|
| Q |
101 |
tgttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatct |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592398 |
tgttttctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatct |
592299 |
T |
|
| Q |
201 |
tgacaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaat |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
592298 |
tgacagccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataatggaatgcttccaat |
592199 |
T |
|
| Q |
301 |
cagtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattttcacga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
592198 |
cagtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatcttcacga |
592099 |
T |
|
| Q |
401 |
aaaagtgccgacaaatcagaggaagacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcc |
500 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
592098 |
aaaagtgccgacaaatcagagaacgacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcc |
591999 |
T |
|
| Q |
501 |
tcattg |
506 |
Q |
| |
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|||||| |
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| T |
591998 |
tcattg |
591993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 3 - 506
Target Start/End: Original strand, 579932 - 580434
Alignment:
| Q |
3 |
catggtataataatggtatcaaacttctgagacttgattgttggttactttatgttgataattgtaaattcctctcttgcaacnnnnnnnggctgtgttg |
102 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
579932 |
catggtataataatggtatcaaacctctgagacttgattgtttgtttctttatgttgataattgtaaattcctctcttgcaactttctttcactgtgtta |
580031 |
T |
|
| Q |
103 |
ttttctgaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttg |
202 |
Q |
| |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580032 |
ttt-ctcaaacatgaaccaaatttacaggactatttctcaaagtggggatcaagcggtgaagttgatttgaagtatgagcttgagcatctgatcatcttg |
580130 |
T |
|
| Q |
203 |
acaaccagtagatgccttttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatca |
302 |
Q |
| |
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||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
580131 |
acagccagtagatgtctcttgggtcgtgaagttcgtgacaagctcttcgatgatgtctctgcattgttccacgatctcgataacggaatgcttccaatca |
580230 |
T |
|
| Q |
303 |
gtgttctcttcccatgcctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatattttcacgaaa |
402 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
580231 |
gtgttctcttcccatacctgccaattccggctcacaggcgccgtgacaacgcacgtaaaaagcttgctgaaatatttgcaaacatcatatcttcacgaaa |
580330 |
T |
|
| Q |
403 |
aagtgccgacaaatcagaggaagacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctc |
502 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580331 |
aattgccgacaaatcagaggacgacatgctgcagtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctc |
580430 |
T |
|
| Q |
503 |
attg |
506 |
Q |
| |
|
|||| |
|
|
| T |
580431 |
attg |
580434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 435 - 506
Target Start/End: Original strand, 37434150 - 37434221
Alignment:
| Q |
435 |
agtgcttcattgactcaaaatacaaagacggtcgcccaacaacagaatctgaagtcacaggactcctcattg |
506 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||| |
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| T |
37434150 |
agtgcttcattgactcaaaatacaaagacaaccgccttacaaccgaagctgaagtcacaggactcctcattg |
37434221 |
T |
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