View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3402_high_3 (Length: 388)
Name: NF3402_high_3
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 29 - 366
Target Start/End: Complemental strand, 2786501 - 2786164
Alignment:
| Q |
29 |
attcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatg |
128 |
Q |
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| T |
2786501 |
attcttgtggcagccagtaatccttatccattgaagagaccaatatatgttcccaagaagaatgaatccattgactcggaatcaggtaaccagttttatg |
2786402 |
T |
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| Q |
129 |
atgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctgg |
228 |
Q |
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| T |
2786401 |
atgctgaagatgttgctaaagcatttccgcagttttctatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgctgg |
2786302 |
T |
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| Q |
229 |
agctgtcaatccacctgttgatgcgaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaac |
328 |
Q |
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| T |
2786301 |
agctgtcaatccaccggttgatgctaaaccccctcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtccttccggaacaacaaac |
2786202 |
T |
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| Q |
329 |
ttgccttcaaatcaaattcatgttaaagttgatgatgt |
366 |
Q |
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| T |
2786201 |
ttgccttcaaatcaaattcatgttaaagttgacgatgt |
2786164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 22517462 - 22517521
Alignment:
| Q |
166 |
tatttctctatctgtcatctgcccaagaaatcttcccaaaatcaaagccatctacaatgc |
225 |
Q |
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| T |
22517462 |
tatttctctatcggtcgtctgcccaaaacaacttcccaaaattaaagccatctacaatgc |
22517521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 160
Target Start/End: Original strand, 22517280 - 22517356
Alignment:
| Q |
84 |
agaagaatgaatccattgactcggaatcaggt-aaccagttttatgatgctgaagatgttgctaaagcatttccgcag |
160 |
Q |
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|||||| ||||||||||||||| || || || |||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
22517280 |
agaagactgaatccattgactca-aaccaagtgaaccagttatatgatgctgaagctgttgctaaagcgtttccgcag |
22517356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 22518232 - 22518281
Alignment:
| Q |
262 |
tcttgttttgatatcagaaggtttcagggaagcccgcactgccttgagtc |
311 |
Q |
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|||| |||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
22518232 |
tcttattttaatatcagaaggttttagggaagcccgcagtgccttgagtc |
22518281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 22517213 - 22517262
Alignment:
| Q |
32 |
cttgtggcagccagtaatccttatccattgaagagaccaatatatgttcc |
81 |
Q |
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| T |
22517213 |
cttgtggcagccagtaatccttacccattgcagacaccggtatatgttcc |
22517262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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