View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3402_low_1 (Length: 746)
Name: NF3402_low_1
Description: NF3402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3402_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 524; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 17 - 685
Target Start/End: Original strand, 41980936 - 41981601
Alignment:
| Q |
17 |
ggagcatcggtagcgaagccatagaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggatt |
116 |
Q |
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| T |
41980936 |
ggagcatcggtagcgaagccgtagaagcaaagatcagcggcggagggagtgtgaagaaaagcgaaaagatcagcataagcgccgtcgcgtgctgtggatt |
41981035 |
T |
|
| Q |
117 |
caggccagggagaacgccagttgaaaatgatggtggaggagagtgcgacatcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41981036 |
caggccagggagaacgccagttgaaaatgatggtggaggagagtgcgacgtcgaaggaaggaggacgagactttgcgtcgtagttgtcgtagacggtgaa |
41981135 |
T |
|
| Q |
217 |
ggtgcggaggaggtagcgggcggagggaagtgaagggaaggagtagcagnnnnnnnngtcggaggaggaggaagggaagaagcggagggttttttctgag |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41981136 |
ggtgcggaggaggtagcgggcggagggaagtgaagggaaggagtagcagttttttttgccggaggaggaggaagggaagaagcggagggttttttctgag |
41981235 |
T |
|
| Q |
317 |
gggaggttgaagcggagtggctccgagacggtggtggtggcgccgccggtgtagtaacggtcggagagccatgttgtattgaaggggtctgttatgtttg |
416 |
Q |
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| T |
41981236 |
gggaggttgaagcggagtggctccgagacggtggtggtggccccgccggtgtagtaacggtcggagagccatgttgtattgaaggggtctgttatgtttg |
41981335 |
T |
|
| Q |
417 |
ttgaagtgccgcagttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaaaagtaatttnnnnnnnnnnngtgtttcttcga |
516 |
Q |
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| T |
41981336 |
ttgaagtgccgcagttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaatagtaatt--aaaaaaaaaaatgtttctttga |
41981433 |
T |
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| Q |
517 |
taagtttgtcgaaattacgatgagttggtgtggaatttcattttgcaaaagttcattttgtatcttttgcaagatgatatgagtcacttacgtatatttc |
616 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
41981434 |
taagtttgtcgaaattacgatgagttggtgtcgaatttcattttgcaaaagttcattttgtat-ttttgcaagatggtatgactcacttacgtatatttc |
41981532 |
T |
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| Q |
617 |
gacaaactcacctgataccgaacatacaaaagtattcggtagagtagtagttaccagaggaaaaagatg |
685 |
Q |
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| T |
41981533 |
gataaactcatttgatatcgaacatacaaaagtactcggtagagtagtagttaccaaagggaaaagatg |
41981601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 441
Target Start/End: Complemental strand, 22083769 - 22083498
Alignment:
| Q |
167 |
tcgaaggaaggaggacgagactttgcgtcgtagttgtcatagacggtgaaggtgcggaggaggtagcgggcggagg-gaagtgaagggaaggagtagcag |
265 |
Q |
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||||||||||||||| | ||||| ||||||||||||| |||||| ||||||||| | ||||||||| | || || | || ||||||| |||||||||| |
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| T |
22083769 |
tcgaaggaaggaggatgcgacttgccgtcgtagttgtcgtagacgacgaaggtgcgaatgaggtagcgtgaggtggtggag-gaagggatggagtagcag |
22083671 |
T |
|
| Q |
266 |
nnnnnnnngtcggaggaggaggaagggaagaagcggagggttttttctgaggggaggttgaagcggagtggctccgagacggtggtggtggcgccgccgg |
365 |
Q |
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| | ||||||| ||||||||||||||| |||||||| | || ||| ||| ||||||| || |||||| ||||| |||||||| |
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| T |
22083670 |
ttttttttgcc---ggaggagatagggaagaagcggagagttttttcgtggtggtggtggaactggagtggttcagagacgaaaccggtggtgccgccgg |
22083574 |
T |
|
| Q |
366 |
tgtagtaacggtcggagagccatgttgtattgaaggggtctgttatgtttgttgaagtgccgcagttaatgtggta |
441 |
Q |
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|| || |||||||||||||||| || || ||||| | ||| || |||| |||| ||||||||||| ||||||||| |
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| T |
22083573 |
tgaagaaacggtcggagagccaagtagtgttgaatgagtcggtggtgttagttggagtgccgcagtcaatgtggta |
22083498 |
T |
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