View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3403_high_13 (Length: 275)

Name: NF3403_high_13
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3403_high_13
NF3403_high_13
[»] chr3 (15 HSPs)
chr3 (17-271)||(43946221-43946475)
chr3 (142-271)||(14195172-14195301)
chr3 (141-268)||(21496800-21496926)
chr3 (17-143)||(40924147-40924274)
chr3 (17-143)||(2735101-2735228)
chr3 (151-267)||(55121318-55121434)
chr3 (141-271)||(19971879-19972007)
chr3 (158-266)||(54788994-54789102)
chr3 (148-271)||(8425179-8425300)
chr3 (142-207)||(38000464-38000529)
chr3 (142-194)||(22126441-22126493)
chr3 (142-194)||(40925750-40925802)
chr3 (142-192)||(2736704-2736754)
chr3 (213-271)||(7276672-7276729)
chr3 (214-271)||(14835817-14835873)
[»] chr2 (9 HSPs)
chr2 (144-271)||(41318225-41318351)
chr2 (24-143)||(5087206-5087326)
chr2 (142-271)||(5885290-5885419)
chr2 (148-260)||(5088794-5088904)
chr2 (212-269)||(9844718-9844775)
chr2 (168-271)||(43327750-43327853)
chr2 (212-248)||(19258381-19258417)
chr2 (220-271)||(17737967-17738018)
chr2 (25-143)||(43523847-43523966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (141-271)||(11748-11878)
[»] chr6 (14 HSPs)
chr6 (138-266)||(27156372-27156500)
chr6 (141-271)||(6059725-6059855)
chr6 (141-269)||(25987978-25988107)
chr6 (141-269)||(26092690-26092819)
chr6 (142-249)||(10894934-10895046)
chr6 (173-271)||(14113875-14113973)
chr6 (52-143)||(95808-95900)
chr6 (194-270)||(31709538-31709613)
chr6 (17-143)||(9303350-9303475)
chr6 (148-271)||(97365-97486)
chr6 (142-228)||(17750054-17750140)
chr6 (219-271)||(14200621-14200673)
chr6 (193-248)||(32398477-32398532)
chr6 (213-271)||(32505073-32505132)
[»] chr5 (21 HSPs)
chr5 (141-271)||(19647107-19647238)
chr5 (142-271)||(35634928-35635057)
chr5 (142-258)||(19662998-19663114)
chr5 (142-271)||(38394993-38395118)
chr5 (157-271)||(38352107-38352221)
chr5 (196-271)||(7349582-7349657)
chr5 (142-271)||(19676799-19676929)
chr5 (151-241)||(42740241-42740330)
chr5 (142-243)||(37259265-37259366)
chr5 (17-143)||(22271809-22271936)
chr5 (194-268)||(34438379-34438453)
chr5 (155-254)||(11776070-11776167)
chr5 (194-271)||(29556800-29556877)
chr5 (142-194)||(22270281-22270333)
chr5 (142-249)||(29086273-29086387)
chr5 (218-271)||(3781289-3781342)
chr5 (151-199)||(21744491-21744539)
chr5 (25-143)||(14008091-14008210)
chr5 (25-143)||(23122480-23122599)
chr5 (221-252)||(26063747-26063778)
chr5 (194-231)||(15302623-15302660)
[»] chr4 (17 HSPs)
chr4 (142-249)||(44504860-44504967)
chr4 (142-270)||(43335272-43335400)
chr4 (17-143)||(14798629-14798756)
chr4 (142-271)||(16401166-16401295)
chr4 (146-266)||(7114366-7114486)
chr4 (213-271)||(9816430-9816488)
chr4 (152-243)||(24535093-24535184)
chr4 (164-271)||(27599661-27599768)
chr4 (142-194)||(37465931-37465983)
chr4 (142-194)||(14797276-14797328)
chr4 (142-237)||(53816126-53816221)
chr4 (230-272)||(53816061-53816103)
chr4 (148-226)||(55405142-55405217)
chr4 (229-271)||(33752995-33753037)
chr4 (221-266)||(9816598-9816643)
chr4 (221-249)||(20038690-20038718)
chr4 (221-249)||(21422683-21422711)
[»] scaffold0005 (2 HSPs)
scaffold0005 (17-143)||(40972-41099)
scaffold0005 (142-194)||(42403-42455)
[»] chr1 (16 HSPs)
chr1 (141-267)||(181569-181696)
chr1 (17-147)||(11053944-11054073)
chr1 (142-248)||(27133135-27133241)
chr1 (194-271)||(48491581-48491658)
chr1 (151-264)||(51064643-51064755)
chr1 (17-143)||(27129750-27129876)
chr1 (142-271)||(3288033-3288164)
chr1 (142-240)||(16763868-16763966)
chr1 (203-271)||(51286652-51286720)
chr1 (142-228)||(4692749-4692834)
chr1 (142-232)||(47074391-47074480)
chr1 (142-249)||(10800969-10801069)
chr1 (142-203)||(8920037-8920098)
chr1 (141-182)||(12307125-12307166)
chr1 (214-259)||(26356105-26356150)
chr1 (221-249)||(18993890-18993918)
[»] chr7 (15 HSPs)
chr7 (146-248)||(8363847-8363949)
chr7 (17-143)||(31420470-31420597)
chr7 (149-246)||(17264466-17264568)
chr7 (142-252)||(18295188-18295297)
chr7 (148-271)||(37126744-37126865)
chr7 (194-268)||(380784-380858)
chr7 (148-260)||(19341086-19341196)
chr7 (142-192)||(31422073-31422123)
chr7 (185-248)||(12002183-12002246)
chr7 (213-271)||(21626436-21626494)
chr7 (142-194)||(18887262-18887314)
chr7 (193-248)||(21452033-21452088)
chr7 (25-143)||(41595240-41595359)
chr7 (151-232)||(3091437-3091516)
chr7 (216-264)||(42005044-42005092)
[»] chr8 (9 HSPs)
chr8 (142-266)||(20099075-20099198)
chr8 (17-135)||(33362110-33362229)
chr8 (148-271)||(18427755-18427878)
chr8 (142-194)||(33363795-33363847)
chr8 (142-194)||(42809733-42809785)
chr8 (142-271)||(32382310-32382430)
chr8 (142-271)||(32436265-32436385)
chr8 (213-270)||(27919111-27919169)
chr8 (221-249)||(14384248-14384276)
[»] scaffold0285 (1 HSPs)
scaffold0285 (142-240)||(7714-7812)
[»] scaffold0054 (1 HSPs)
scaffold0054 (142-240)||(3543-3641)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 43946221 - 43946475
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgactttgt 116  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| |||||||||    
T  43946221 agggttagaaaatatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaaacttatgatgagtcaaaaaatgaacaaatgactttgt 43946320  T
Q  117 gttaagatttgttaataaagctggttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaata 216  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43946321 gttaagatttgttgataaagctggttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaata 43946420  T
Q  217 tgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  43946421 tgatttatatattttagtttattttgatggcggctatcccaaacttttttgtctg 43946475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 14195301 - 14195172
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    |||||||||||||||||||||||||| |||||| |||||||  ||||||   ||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  14195301 tttatatattatgtagtttaaattttaaatgattgatttttagtttattacaacttaaatgagttgtatgcaatatgatttatatattttagtttatttt 14195202  T
Q  242 gatggcggtcatcccaaacttttttgtctg 271  Q
    |||||| |||| ||||||||||||||||||    
T  14195201 gatggcagtcaccccaaacttttttgtctg 14195172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 141 - 268
Target Start/End: Original strand, 21496800 - 21496926
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    |||||||| |||| ||||||||||||||||||||| ||||||| ||||||   ||||||||||||||||  |||||||||||||||||||||||||||||    
T  21496800 ttttatatgttat-tagtttaaattttgaatgatcaatttttggtttattaaaacttaaatgtgttgtatgcaatatgatttatatattttagtttattt 21496898  T
Q  241 tgatggcggtcatcccaaacttttttgt 268  Q
    ||||||| | ||||||||||||||||||    
T  21496899 tgatggcagacatcccaaacttttttgt 21496926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 40924147 - 40924274
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||  ||||| || || |||    
T  40924147 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagcttgtgatgagtcaaaaaaggaacaaatggctcttg 40924246  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  40924247 tgttaaggtttgttgataaagctggttt 40924274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 2735101 - 2735228
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||  |||||| |||||||| |||||| || || |||    
T  2735101 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgtatcgtcgttgatgaagctcgtgatgagtcaaaaaagaaacaaatggctcttg 2735200  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  2735201 tgttaaggtttgttgataaagctggttt 2735228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 267
Target Start/End: Original strand, 55121318 - 55121434
Alignment:
Q  151 tatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggt 250  Q
    ||||| ||||| ||||||||||||||||||||||||||||   | |||||||||||| |  |||||| |||||||||||||| ||||||||||||||||     
T  55121318 tatgttgtttagattttgaatgatcgatttttgatttattacaagttaaatgtgttgcatgcaatataatttatatattttaatttattttgatggcggc 55121417  T
Q  251 catcccaaacttttttg 267  Q
    || ||||||||||||||    
T  55121418 caccccaaacttttttg 55121434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 19972007 - 19971879
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta-tt 239  Q
    |||||| ||||||| | |||||||||||||||||||||||||| ||||||   |||||||| |||||||   |||||||||||||||||||||| || ||    
T  19972007 ttttatgtattatgcactttaaattttgaatgatcgatttttggtttatt---acttaaatatgttgtatgaaatatgatttatatattttagtctattt 19971911  T
Q  240 ttgatggcggtcatcccaaacttttttgtctg 271  Q
    || ||||||| ||||||||||  |||||||||    
T  19971910 tttatggcggccatcccaaacaattttgtctg 19971879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 54788994 - 54789102
Alignment:
Q  158 tttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatccca 257  Q
    |||||||||||||||||||||||||| ||||||   |||||||| |||| ||  ||||||| |||||||||||||||||||||||| | ||  |||||||    
T  54788994 tttaaattttgaatgatcgatttttggtttattacaacttaaatatgttatattcaatatggtttatatattttagtttattttgacgacgaccatccca 54789093  T
Q  258 aactttttt 266  Q
    || ||||||    
T  54789094 aattttttt 54789102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 271
Target Start/End: Complemental strand, 8425300 - 8425179
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta-ttttgatgg 246  Q
    ||||||| | |||||||||||||||||||||||||| ||||||   |||||||| |||||||   |||||||||||||||||||||| || |||| ||||    
T  8425300 tattatgcactttaaattttgaatgatcgatttttggtttatt---acttaaatatgttgtatgaaatatgatttatatattttagtctattttttatgg 8425204  T
Q  247 cggtcatcccaaacttttttgtctg 271  Q
    |||  |||||||||  |||||||||    
T  8425203 cggctatcccaaacaattttgtctg 8425179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 38000529 - 38000464
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttg 207  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||   ||||||||||||||    
T  38000529 tttatatattatgtagtttaaattttgaatgatcgatttttggtatattacaacttaaatgtgttg 38000464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 22126493 - 22126441
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  22126493 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 22126441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 40925750 - 40925802
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  40925750 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 40925802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 2736704 - 2736754
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttatttt 192  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||    
T  2736704 tttatatattatgtagtttaaattttgaatgattggtttttggtttatttt 2736754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 7276672 - 7276729
Alignment:
Q  213 aatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||||||||| ||||||| ||||||  ||| ||||||||| |||||||||||    
T  7276672 aatatgatttatatattgtagttta-tttgataacggccatcccaaatttttttgtctg 7276729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 14835817 - 14835873
Alignment:
Q  214 atatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||||||||||||||||| |||||| |||| |||||||   |||||||||||    
T  14835817 atatgatttatatattttagttta-tttgatagcggccatcccatttttttttgtctg 14835873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 271
Target Start/End: Original strand, 41318225 - 41318351
Alignment:
Q  144 tatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttga 243  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||   ||||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  41318225 tatatattatgtagtttaaattttaaatgatcgattttttgtttattacaacttaaatgtgtt-tatgcaatatgatttatatattttagtttattttga 41318323  T
Q  244 tggcggtcatcccaaacttttttgtctg 271  Q
    |||||| || ||||||||||||||||||    
T  41318324 tggcggccaccccaaacttttttgtctg 41318351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 5087206 - 5087326
Alignment:
Q  24 gaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaag 122  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||  ||||| || || ||||||||||    
T  5087206 gaaaacatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcttgtgttaag 5087305  T
Q  123 atttgttaataaagctggttt 143  Q
    ||||||| |||||||||||||    
T  5087306 atttgttgataaagctggttt 5087326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 5885419 - 5885290
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||   ||||||||||||||||  |||||||||| |||| ||||||||||||||    
T  5885419 tttatatattatgtagtttaaattttgaatgattggtttttggtttattacaacttaaatgtgttgtatgcaatatgattcatatgttttagtttatttt 5885320  T
Q  242 gatggcggtcatcccaaacttttttgtctg 271  Q
    ||| || | || |||||||| |||||||||    
T  5885319 gatagcagccaccccaaactcttttgtctg 5885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 5088794 - 5088904
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta-ttttgatgg 246  Q
    ||||||| | |||||||||||||||||||||||||| ||||||   |||||||| |||||||   |||||||||||||||||||||| || |||| ||||    
T  5088794 tattatgcactttaaattttgaatgatcgatttttggtttatt---acttaaatatgttgtatgaaatatgatttatatattttagtctattttttatgg 5088890  T
Q  247 cggtcatcccaaac 260  Q
    ||| ||||||||||    
T  5088891 cggccatcccaaac 5088904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 9844775 - 9844718
Alignment:
Q  212 caatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtc 269  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  9844775 caatatgatttatatattttagtttattttgatggcggtcaccccaaatttttttgtc 9844718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 43327750 - 43327853
Alignment:
Q  168 gaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagt---ttattttgatggcggtcatcccaaactttt 264  Q
    |||||||||||||||| ||||||   |||||||| |||||||   ||||||||||||||||||||||   || |||| ||||||| ||||||||||  ||    
T  43327750 gaatgatcgatttttggtttatt---acttaaatatgttgtatgaaatatgatttatatattttagtctattttttttatggcggccatcccaaacaatt 43327846  T
Q  265 ttgtctg 271  Q
    |||||||    
T  43327847 ttgtctg 43327853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 19258417 - 19258381
Alignment:
Q  212 caatatgatttatatattttagtttattttgatggcg 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  19258417 caatatgatttatatattttagtttattttgatggcg 19258381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 17738018 - 17737967
Alignment:
Q  220 tttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||||||||| |||| ||||||| || || |||||||||||||||    
T  17738018 tttatatattttagtttgttttaatggcggccacccgaaacttttttgtctg 17737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 43523847 - 43523966
Alignment:
Q  25 aaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaaga 123  Q
    ||||||||| |||||  ||||||||||||| || ||||| | | |||| |||||||||   ||||| ||| ||||  ||||| || || |||||||||||    
T  43523847 aaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaagctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaaga 43523946  T
Q  124 tttgttaataaagctggttt 143  Q
    |||||| |||||| ||||||    
T  43523947 tttgttgataaagatggttt 43523966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 11878 - 11748
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||   ||||||||||||| ||  |||||||||||||||||||||||||||||    
T  11878 ttttatatattatgtagtttaaattttgaatgatcgttttttggtttattacaacttaaatgtgttatatgcaatatgatttatatattttagtttattt 11779  T
Q  241 tgatggcggtcatcccaaacttttttgtctg 271  Q
    | || |||| || ||||||| ||||||||||    
T  11778 taattgcggccaccccaaacctttttgtctg 11748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 27156500 - 27156372
Alignment:
Q  138 tggttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta 237  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  |||||   |||||||||||| |||  ||||||||||||||||||||| ||||    
T  27156500 tggttttatatattatgtagtttaaattttgaatgatcaatttttggcttattacaacttaaatgtgtagtatgcaatatgatttatatattttaattta 27156401  T
Q  238 ttttgatggcggtcatcccaaactttttt 266  Q
    |||||||||||| || || ||||||||||    
T  27156400 ttttgatggcggccaccctaaactttttt 27156372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 6059855 - 6059725
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| |||||| | |||||||| |||| ||  ||||||||||||||||||||| |||||||    
T  6059855 ttttatatattatatagtttaaattttaaatgatcgatttttggtttattataacttaaatatgttatatacaatatgatttatatattttaatttattt 6059756  T
Q  241 tgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||| | | || |||||| | |||||||||    
T  6059755 tgatgacagccaccccaaattattttgtctg 6059725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 25987978 - 25988107
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgta-accaatatgatttatatattttagtttatt 239  Q
    |||||| |||| ||||||||||||||||||| |||||||||| |||||||   |||||||| |||||||  | ||||| |||||||||||||||||||||    
T  25987978 ttttatgtattgtgtagtttaaattttgaattatcgatttttaatttattacaacttaaatatgttgtatgcaaatataatttatatattttagtttatt 25988077  T
Q  240 ttgatggcggtcatcccaaacttttttgtc 269  Q
    ||||||| || |||||||||  ||||||||    
T  25988078 ttgatggtggccatcccaaatatttttgtc 25988107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 141 - 269
Target Start/End: Original strand, 26092690 - 26092819
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgta-accaatatgatttatatattttagtttatt 239  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||   || ||||| |||||||    |||||||||||||||||||||||||||    
T  26092690 ttttatgtattatgtagtttaaattttgaattatcgatttttgatttattacaacataaatatgttgtatgtaaatatgatttatatattttagtttatt 26092789  T
Q  240 ttgatggcggtcatcccaaacttttttgtc 269  Q
    ||||||| || |||||| ||  ||||||||    
T  26092790 ttgatggtggccatccctaatatttttgtc 26092819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 10895046 - 10894934
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttata-----tattttagttt 236  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||  || ||||||||||||||  |||||| |||||||     |||||||||||    
T  10895046 tttatatattatgtagtttaaattttgaatgatcggtttttggtttattacgaattaaatgtgttgtatgcaatataatttatatattatattttagttt 10894947  T
Q  237 attttgatggcgg 249  Q
    |||||||||||||    
T  10894946 attttgatggcgg 10894934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 14113973 - 14113875
Alignment:
Q  173 atcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||  ||||||   ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  14113973 atcgatttttagtttattactacttaaatgtgttctatgcaatatgatttatatattttagtttattttgatggcggcgatcccaaacttttttgtctg 14113875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 95808 - 95900
Alignment:
Q  52 ttctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaagatttgttaataaagctggttt 143  Q
    |||||||||||||| ||||||||||||||||  |||||| ||||||||  ||||| || || ||||||||||||||||| |||||||||||||    
T  95808 ttctaaattttgcatcgttgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctattgtgttaagatttgttgataaagctggttt 95900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 270
Target Start/End: Complemental strand, 31709613 - 31709538
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtct 270  Q
    |||||||| |||||||  |||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||    
T  31709613 acttaaatttgttgtatgcaatatgatttatatattttagttta-tttgatagcggtcaccccaaacttttttgtct 31709538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 9303350 - 9303475
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaa-taaacaactgactttg 115  Q
    ||||| |||||||| ||||||||| ||| |||||||||| ||||||||| |||||||||| ||||| ||||||| ||||||||  |||||| || | |      
T  9303350 agggtgagaaaacaaattcgtgaagaaaatggtgattct-aattttgcatcgttgttgataaagctcatgatgagtcaaaaaaggaaacaaatggc-tca 9303447  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    |||||||||||||| |||||||||||||    
T  9303448 tgttaagatttgttgataaagctggttt 9303475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 97365 - 97486
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta-ttttgatgg 246  Q
    ||||||| | |||||||||||||||||||||||||| ||||||   |||||||| |||||||   | |||||||||||||||||||| || |||| ||||    
T  97365 tattatgcactttaaattttgaatgatcgatttttggtttatt---acttaaatatgttgtatgaagtatgatttatatattttagtctattttttatgg 97461  T
Q  247 cggtcatcccaaacttttttgtctg 271  Q
     || ||||||||||  |||||||||    
T  97462 aggccatcccaaacaattttgtctg 97486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 17750054 - 17750140
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatat 228  Q
    ||||||||||||||| || ||||||||||||||| |||||| ||||||||| |||||||| |||||||  |||||||| ||| ||||    
T  17750054 tttatatattatgtacttcaaattttgaatgatcaatttttaatttattttaacttaaatatgttgtatgcaatatgacttaaatat 17750140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 14200673 - 14200621
Alignment:
Q  219 atttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||| ||||||||||||||||||| |||||||||  ||||||||||    
T  14200673 atttatatattctagtttattttgatggcggccatcccaaatatttttgtctg 14200621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 32398477 - 32398532
Alignment:
Q  193 gacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcg 248  Q
    ||||||||||||||||    ||||||||||||||||| ||||||||||||||||||    
T  32398477 gacttaaatgtgttgtgtttaatatgatttatatattatagtttattttgatggcg 32398532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 32505073 - 32505132
Alignment:
Q  213 aatatgatttatatattttagttta-ttttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||||||||||||||| || |||| ||||||| ||||||||||  |||||||||    
T  32505073 aatatgatttatatattttagtctattttttatggcggccatcccaaacaattttgtctg 32505132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 271
Target Start/End: Original strand, 19647107 - 19647238
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttga-tttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatt 239  Q
    ||||||| ||||||||||||||||||||||||| ||||||||   ||||||   ||||||||||||||||  |||||| |||||||||||||||||||||    
T  19647107 ttttatacattatgtagtttaaattttgaatgaacgatttttttgtttattacaacttaaatgtgttgtatgcaatataatttatatattttagtttatt 19647206  T
Q  240 ttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||| || ||||||||||||||||||    
T  19647207 ttgatggcgggcaccccaaacttttttgtctg 19647238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 35635057 - 35634928
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||   ||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  35635057 tttatatattatgtagtttaaattttgaatgatcgttttttggtttattacaacttaaatgtgttatatgcaatatgatttatatattttagtttatttt 35634958  T
Q  242 gatggcggtcatcccaaacttttttgtctg 271  Q
     || || | || ||||||| ||||||||||    
T  35634957 aattgcagccaccccaaacctttttgtctg 35634928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 19663114 - 19662998
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||||||||||||  ||||||   |||||||||||||||||||||    
T  19663114 tttatatattatgtagtttaaattttgaataatcgatttttgatttattacaacttaaatgtgttgtatacaatatagattatatattttagtttatttt 19663015  T
Q  242 gatggcggtcatcccaa 258  Q
    ||| |||| || |||||    
T  19663014 gatagcggccaccccaa 19662998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 38395118 - 38394993
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||  |||||    ||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  38395118 tttatatattatgtagtttaaattttgaatgatcgttttttagtttat----acttaaatgtgttatatgcaatatgatttatatattttagtttatttt 38395023  T
Q  242 gatggcggtcatcccaaacttttttgtctg 271  Q
     || |||| || ||||||| ||||||||||    
T  38395022 aattgcggccaccccaaacctttttgtctg 38394993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 38352107 - 38352221
Alignment:
Q  157 gtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatccc 256  Q
    ||||||||||||||||||||||||||| ||||||   ||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||| |||| |    
T  38352107 gtttaaattttgaatgatcgatttttggtttattacaacttaaatgtgttgtatgcaatatgattcatatattttagtttattttaatggcggccatctc 38352206  T
Q  257 aaacttttttgtctg 271  Q
    | ||||| |||||||    
T  38352207 atactttattgtctg 38352221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 7349582 - 7349657
Alignment:
Q  196 ttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7349582 ttaaatgtgttgtatacaatatgatttatatattttagtttattttgatggcggtcatcctaaacttttttgtctg 7349657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 19676929 - 19676799
Alignment:
Q  142 tttatatattatgtagtttaaatttt-gaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    |||||||||||||||||||||||||| || ||| ||||||||| ||||||   ||||||||||||||||  |||||| | ||||||||||||||||||||    
T  19676929 tttatatattatgtagtttaaatttttgattgaccgatttttggtttattacaacttaaatgtgttgtacgcaatataaattatatattttagtttattt 19676830  T
Q  241 tgatggcggtcatcccaaacttttttgtctg 271  Q
    |||| |||| || |||||  |||||||||||    
T  19676829 tgatagcggccaccccaattttttttgtctg 19676799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 42740330 - 42740241
Alignment:
Q  151 tatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||  ||||||||||||||||||||||||| ||||    
T  42740330 tatgtagtttaaattttgaatgatcgattttttgtttattatgactt-aatgtgttgtatgcaatatgatttatatattttagtttttttt 42740241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 37259265 - 37259366
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||| ||||| |||||||| ||||||||||||||| ||||| ||||||   |||||||| |||||||  ||||||||||||||||||||||||||||||    
T  37259265 tttatgtattacgtagtttacattttgaatgatcgacttttggtttattacaacttaaatatgttgtatgcaatatgatttatatattttagtttatttt 37259364  T
Q  242 ga 243  Q
    ||    
T  37259365 ga 37259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 22271936 - 22271809
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||| | | | ||||||||||||  |||||| ||||||||  ||||| || || |||    
T  22271936 agggtgagaaaacatatttgtgaagaaattggtgattctaaattttgtatcatcgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcttg 22271837  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  22271836 tgttaaggtttgttgataaagctggttt 22271809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 34438453 - 34438379
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgt 268  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  34438453 acttaaatttgttgtatgcaatatgatttatatattttagtttattttgaaggcggccaccccaaacttttttgt 34438379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 254
Target Start/End: Original strand, 11776070 - 11776167
Alignment:
Q  155 tagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatc 254  Q
    ||||||||||||||||||||||||||||||||||||   | |||||  | | |||  ||||||  |||||||||||||||||||||||||||||| ||||    
T  11776070 tagtttaaattttgaatgatcgatttttgatttattacaaattaaa--tatcgtatacaatatcttttatatattttagtttattttgatggcggccatc 11776167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 29556877 - 29556800
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||| |||||||  ||| ||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||||    
T  29556877 acttaaatttgttgtatgcaacatgatttttatcttttggtttattttgatggcggtcactccaaacttttttgtctg 29556800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 22270333 - 22270281
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  22270333 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 22270281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 29086273 - 29086387
Alignment:
Q  142 tttatatattatgt--agtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattt-----tagt 234  Q
    ||||||||||||||  ||| ||||||||||||||||  |||||| ||||||  ||||||||| |||||||  ||||||| ||||||||||      ||||    
T  29086273 tttatatattatgtgtagtataaattttgaatgatcagtttttggtttattacgacttaaatatgttgtatgcaatatgttttatatattacattatagt 29086372  T
Q  235 ttattttgatggcgg 249  Q
    |||||||||||||||    
T  29086373 ttattttgatggcgg 29086387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 3781342 - 3781289
Alignment:
Q  218 gatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||||| ||||||||||||||||||| |||||||||  ||||||||||    
T  3781342 gatttatatattctagtttattttgatggcggccatcccaaatatttttgtctg 3781289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 21744539 - 21744491
Alignment:
Q  151 tatgtagtttaaattttgaatgatcgatttttgatttattttgacttaa 199  Q
    ||||||||||||||||||||| ||||||||||| |||||| ||||||||    
T  21744539 tatgtagtttaaattttgaataatcgatttttggtttattatgacttaa 21744491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 14008091 - 14008210
Alignment:
Q  25 aaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaaga 123  Q
    ||||||||| |||||  ||||||||||||| || ||||| | | |||| |||||||||   ||||| ||| ||||  ||||| || || |||||||||||    
T  14008091 aaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaagctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaaga 14008190  T
Q  124 tttgttaataaagctggttt 143  Q
    |||||| |||||| ||||||    
T  14008191 tttgttgataaagatggttt 14008210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 23122599 - 23122480
Alignment:
Q  25 aaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaaga 123  Q
    |||||||||||||||  ||||||||||||| || ||||| | | |||| |||||||||   ||||| ||| ||||  ||||| || || | |||||||||    
T  23122599 aaaacatattcgtgaggaaattggtgattccaagttttgtatcattgtagatgaagctcgcgatgagtcacaaaaggaacaaatggctctggtgttaaga 23122500  T
Q  124 tttgttaataaagctggttt 143  Q
    |||||| |||||| ||||||    
T  23122499 tttgttgataaagatggttt 23122480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 252
Target Start/End: Original strand, 26063747 - 26063778
Alignment:
Q  221 ttatatattttagtttattttgatggcggtca 252  Q
    ||||||||||||||||||||||||||||||||    
T  26063747 ttatatattttagtttattttgatggcggtca 26063778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 15302660 - 15302623
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatatttt 231  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  15302660 acttaaatgtgttgtatacaatatgatttatatatttt 15302623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 142 - 249
Target Start/End: Original strand, 44504860 - 44504967
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||||||   |||||||||||||||||||| ||||||||    
T  44504860 tttatatattatgtagtttaaattttaaatgattgatttttgatttattacgacttaaatgtgttgtatgtaatatgatttatatattttaatttatttt 44504959  T
Q  242 gatggcgg 249  Q
    ||||||||    
T  44504960 gatggcgg 44504967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 43335400 - 43335272
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||| | ||||   ||||||||||||||||  |||||||||| ||||||||||||||| |||    
T  43335400 tttatatattatgtagtttaaattttgaatgatcggtttttggtatattacaacttaaatgtgttgtatgcaatatgattcatatattttagtttacttt 43335301  T
Q  242 gatggcggtcatcccaaacttttttgtct 270  Q
    ||| || | || |||||||| ||||||||    
T  43335300 gatagcagccaccccaaactcttttgtct 43335272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 14798756 - 14798629
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||  |||||| ||||||||  ||||| || || |||    
T  14798756 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcttg 14798657  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  14798656 tgttaaggtttgttgataaagctggttt 14798629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 16401166 - 16401295
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||| ||||||||||||||||||||||||| |||||||| | ||||||   ||||||||||||||||  ||||||||||||||||||| | ||||||||    
T  16401166 tttatttattatgtagtttaaattttgaatgttcgattttcggtttattacaacttaaatgtgttgtatgcaatatgatttatatatttaactttatttt 16401265  T
Q  242 gatggcggtcatcccaaacttttttgtctg 271  Q
    ||||| ||  | | ||||||||||||||||    
T  16401266 gatggaggctacctcaaacttttttgtctg 16401295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 266
Target Start/End: Original strand, 7114366 - 7114486
Alignment:
Q  146 tatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatg 245  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||   |||||||||| |||||  |||||| ||||||||||||||||| ||||||||     
T  7114366 tatattatgtaatttaaattttgaatgatcgatttttagtttattacaacttaaatgtattgtatgcaatataatttatatattttagttcattttgata 7114465  T
Q  246 gcggtcatcccaaactttttt 266  Q
    ||||||| |||||| ||||||    
T  7114466 gcggtcaccccaaaatttttt 7114486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 9816430 - 9816488
Alignment:
Q  213 aatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9816430 aatatgatttatatattttagtttattttgatggcggtcaccccaaacttttttgtctg 9816488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 24535184 - 24535093
Alignment:
Q  152 atgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttga 243  Q
    |||||||||||||||||||||||||||||||| | ||||   ||||||||||||| ||   ||||| |||||||||||||||||||||||||    
T  24535184 atgtagtttaaattttgaatgatcgatttttggtgtattacaacttaaatgtgttatatgtaatataatttatatattttagtttattttga 24535093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 27599661 - 27599768
Alignment:
Q  164 ttttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttt 263  Q
    |||||||||||||||| ||| ||||||   |||||||||| |||||  ||||||||||||| |||||||||||||||||||||| |||| | |||| |||    
T  27599661 ttttgaatgatcgattattggtttattacaacttaaatgtattgtatgcaatatgatttatttattttagtttattttgatggcagtcacctcaaatttt 27599760  T
Q  264 tttgtctg 271  Q
    ||| ||||    
T  27599761 tttatctg 27599768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 37465983 - 37465931
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  37465983 tttatatattatgtagtttaaattttgaatgattgatttttggtttattttga 37465931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 14797328 - 14797276
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  14797328 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 14797276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 53816221 - 53816126
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta 237  Q
    |||||||||||| || || |  ||||||||||||| |||||| ||||||   | |||||| |||||||   |||||||||||||||||||||||||    
T  53816221 tttatatattatataattgactttttgaatgatcgctttttggtttattaaaatttaaatatgttgtatgaaatatgatttatatattttagttta 53816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 53816103 - 53816061
Alignment:
Q  230 ttagtttattttgatggcggtcatcccaaacttttttgtctgt 272  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  53816103 ttagtttaatttgacggcggtcatcccaaacttttttgtctgt 53816061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 55405142 - 55405217
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatat 226  Q
    ||||||| | |||||||||||||||||| ||||||| ||||||   |||||||| |||||||   ||||||||||||||    
T  55405142 tattatgcactttaaattttgaatgatcaatttttggtttatt---acttaaatatgttgtatgaaatatgatttatat 55405217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 33752995 - 33753037
Alignment:
Q  229 tttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||| ||||||||||||||| || ||||||||||||||||||    
T  33752995 tttagcttattttgatggcggccaccccaaacttttttgtctg 33753037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 9816598 - 9816643
Alignment:
Q  221 ttatatattttagtttattttgatggcggtcatcccaaactttttt 266  Q
    ||||||||||||||||||| ||||||| |  |||||||||||||||    
T  9816598 ttatatattttagtttattctgatggcagctatcccaaactttttt 9816643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 20038690 - 20038718
Alignment:
Q  221 ttatatattttagtttattttgatggcgg 249  Q
    |||||||||||||||||||||||||||||    
T  20038690 ttatatattttagtttattttgatggcgg 20038718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 21422683 - 21422711
Alignment:
Q  221 ttatatattttagtttattttgatggcgg 249  Q
    |||||||||||||||||||||||||||||    
T  21422683 ttatatattttagtttattttgatggcgg 21422711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 40972 - 41099
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||| ||||||||  ||||| || || |||    
T  40972 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagcttgtgatgagtcaaaaaaggaacaaatggctcttg 41071  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  41072 tgttaaggtttgttgataaagctggttt 41099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 42403 - 42455
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  42403 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 42455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 141 - 267
Target Start/End: Original strand, 181569 - 181696
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttag-tttatt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||| || ||  |||| ||||||||||||||||| ||| ||    
T  181569 ttttatatattatgtagtttaaattttgaatgatcgatttttggtttattacgacttaaatgtattatatgcaatgtgatttatatattttagttttttt 181668  T
Q  240 ttgatggcggtcatcccaaacttttttg 267  Q
    || ||||||| || ||||||||||||||    
T  181669 tttatggcggccaccccaaacttttttg 181696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 11054073 - 11053944
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgactttgt 116  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| || ||||||| ||||||||  ||||| || | | ||    
T  11054073 agggtgagaaaatatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaaactcatgatgagtcaaaaaaggaacaaatggc-tcgt 11053975  T
Q  117 gttaagatttgttaataaagctggttttata 147  Q
    ||||||||||||| |||||||||||||||||    
T  11053974 gttaagatttgttgataaagctggttttata 11053944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 248
Target Start/End: Original strand, 27133135 - 27133241
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||   |||||||| ||||||||||||||||||||    
T  27133135 tttatatattatgtagtttaaattttgaatgatcggtttttgatttattacgacttaaatatgttgtatttaatatgatctatatattttagtttatttt 27133234  T
Q  242 gatggcg 248  Q
     ||||||    
T  27133235 tatggcg 27133241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 48491658 - 48491581
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48491658 acttaagtgtgttgtaaacaatatgatttatatattttagtttattttgatggcggccatcccaaacttttttgtctg 48491581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 51064755 - 51064643
Alignment:
Q  151 tatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggt 250  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||  |||||| ||||||||||||||||||||||||| | |||     
T  51064755 tatgtagtttaaattttgaatgatcgatttttgatttattacaacttaaatgtattgtatgcaatataatttatatattttagtttattttgacgacggc 51064656  T
Q  251 catcccaaactttt 264  Q
    || |||||||||||    
T  51064655 ca-cccaaactttt 51064643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 27129750 - 27129876
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||  ||||| || ||  ||    
T  27129750 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgttgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcctg 27129849  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    |||| || |||||| |||||||||||||    
T  27129850 tgtt-aggtttgttgataaagctggttt 27129876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 271
Target Start/End: Complemental strand, 3288164 - 3288033
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatata-ttttagttta-tt 239  Q
    ||||||||| |||| ||||||||||| ||||||  ||||||| ||||||   ||||||||||||| ||  |||||| ||||||||| |||||||||| ||    
T  3288164 tttatatatcatgtggtttaaattttaaatgattaatttttggtttattacaacttaaatgtgttatatgcaatataatttatatatttttagtttattt 3288065  T
Q  240 ttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||||| || ||||||||||||||||||    
T  3288064 ttgatggcggccaccccaaacttttttgtctg 3288033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 16763966 - 16763868
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    ||||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||||||| |||||  |||||||||||||||||||| ||||||||    
T  16763966 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcaatatgatttatatattttggtttattt 16763868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 51286652 - 51286720
Alignment:
Q  203 tgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    |||||||  |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  51286652 tgttgtatacaatatgatttatatattttagtttattttcatggcggccatcccaaacttttttgtctg 51286720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 228
Target Start/End: Original strand, 4692749 - 4692834
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatat 228  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||   ||||||||||||||||   ||||||||||||||||    
T  4692749 tttatatattatgtagtttacattt-gaatgatcgatttttgatttattacaacttaaatgtgttgtatggaatatgatttatatat 4692834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 47074480 - 47074391
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatatttta 232  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||  | |||||||||||| |  |||||| ||||||||||||||    
T  47074480 tttatatattatgtagtttaaattttgaatgatcaatttttggttta-ttacaattaaatgtgttgcatgcaatataatttatatatttta 47074391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 249
Target Start/End: Complemental strand, 10801069 - 10800969
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||| ||||       | ||||||  ||| ||||| | |||||  |||||||||||||||||||| |||||||||    
T  10801069 tttatatattatgtagtttaaattttgaacgatc-------ggtttattacgacctaaatatattgtatgcaatatgatttatatattttggtttatttt 10800977  T
Q  242 gatggcgg 249  Q
    | ||||||    
T  10800976 gttggcgg 10800969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 8920037 - 8920098
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgt 203  Q
    ||||| ||||||||| |||||||||||||||||||| ||| | ||||||   ||||||||||    
T  8920037 tttatgtattatgtaatttaaattttgaatgatcgactttcggtttattacaacttaaatgt 8920098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 12307166 - 12307125
Alignment:
Q  141 ttttatatattatgtagtttaaattttgaatgatcgattttt 182  Q
    |||||| ||||||| | |||||||||||||||||||||||||    
T  12307166 ttttatgtattatgcactttaaattttgaatgatcgattttt 12307125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 26356105 - 26356150
Alignment:
Q  214 atatgatttatatattttagtttattttgatggcggtcatcccaaa 259  Q
    |||||||||||||||||||||||||||| || |||| || ||||||    
T  26356105 atatgatttatatattttagtttatttttatagcggccaccccaaa 26356150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 18993918 - 18993890
Alignment:
Q  221 ttatatattttagtttattttgatggcgg 249  Q
    |||||||||||||||||||||||||||||    
T  18993918 ttatatattttagtttattttgatggcgg 18993890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 8363847 - 8363949
Alignment:
Q  146 tatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatg 245  Q
    |||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||||    |||||||||||||||||||||||||||||||||    
T  8363847 tatattatgtagtttaaattttgaatgatcgatttttggtttataacgacttaaatgtgttgtgtttaatatgatttatatattttagtttattttgatg 8363946  T
Q  246 gcg 248  Q
    |||    
T  8363947 gcg 8363949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 31420470 - 31420597
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||  |||||| ||||||||  ||||| || || |||    
T  31420470 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcttg 31420569  T
Q  116 tgttaagatttgttaataaagctggttt 143  Q
    ||||||| |||||| |||||||||||||    
T  31420570 tgttaaggtttgttgataaagctggttt 31420597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 149 - 246
Target Start/End: Complemental strand, 17264568 - 17264466
Alignment:
Q  149 attatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttata-----tattttagtttattttga 243  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||  |||||| |||||||     ||||||||||||||||||    
T  17264568 attatgtagtttaaattttgaatgatcggtttttgatttattacgacttaaatgtgttgtatacaatataatttatatattatattttagtttattttga 17264469  T
Q  244 tgg 246  Q
    |||    
T  17264468 tgg 17264466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 252
Target Start/End: Original strand, 18295188 - 18295297
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||   |||||||||| |||||  |||||| | |||||||  ||||||||||||    
T  18295188 tttatatattatgtagtttaaattttgaatgatcgattttttatttattactacttaaatgtattgtatacaatat-aattatatacattagtttatttt 18295286  T
Q  242 gatggcggtca 252  Q
    ||| |||||||    
T  18295287 gatagcggtca 18295297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 37126744 - 37126865
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagttta-ttttgatgg 246  Q
    ||||||| | |||||||||||||||||||||||||| ||||||   |||||||| |||||||   |||||||||||||||||||||| || |||| ||||    
T  37126744 tattatgcactttaaattttgaatgatcgatttttggtttatt---acttaaatatgttgtatgaaatatgatttatatattttagtctattttttatgg 37126840  T
Q  247 cggtcatcccaaacttttttgtctg 271  Q
    ||| ||||||||||  |||||||||    
T  37126841 cggccatcccaaacaattttgtctg 37126865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 268
Target Start/End: Original strand, 380784 - 380858
Alignment:
Q  194 acttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgt 268  Q
    |||||||| |||||||  |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||    
T  380784 acttaaatttgttgtatgcaatatgatttatatattttagtttattttgatgacggtcactccaaacttttttgt 380858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 260
Target Start/End: Original strand, 19341086 - 19341196
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggc 247  Q
    |||||| || ||||||||| |||||||||||||||||||||||   ||||||||||||| ||  |||||||||| ||||||||| ||||||| |||| |     
T  19341086 tattatataatttaaatttggaatgatcgatttttgatttattacaacttaaatgtgttata--caatatgattcatatatttttgtttattctgattgt 19341183  T
Q  248 ggtcatcccaaac 260  Q
    || ||||||||||    
T  19341184 ggccatcccaaac 19341196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 31422073 - 31422123
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttatttt 192  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  31422073 tttatatattatgtagtttaaattttgaatgattgatttttggtttatttt 31422123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 248
Target Start/End: Complemental strand, 12002246 - 12002183
Alignment:
Q  185 tttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcg 248  Q
    |||||| |||||||||||||||||    ||||||||||||||||| ||||||||||||||||||    
T  12002246 tttattatgacttaaatgtgttgtgtttaatatgatttatatattatagtttattttgatggcg 12002183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 21626436 - 21626494
Alignment:
Q  213 aatatgatttatatattttagtttattttgatggcggtcatcccaaacttttttgtctg 271  Q
    ||||||||||||||||||||||||||||||||| ||  || |||||| |||||||||||    
T  21626436 aatatgatttatatattttagtttattttgatgacgtccaccccaaatttttttgtctg 21626494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 18887262 - 18887314
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    |||||||||||||||||||||||||| ||||| || |||||| ||||||||||    
T  18887262 tttatatattatgtagtttaaattttaaatgaacggtttttggtttattttga 18887314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 21452088 - 21452033
Alignment:
Q  193 gacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggcg 248  Q
    ||||||||||||||||    ||||||||||||||||| ||||||||||||||||||    
T  21452088 gacttaaatgtgttgtgtttaatatgatttatatattatagtttattttgatggcg 21452033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 41595240 - 41595359
Alignment:
Q  25 aaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttgtgttaaga 123  Q
    ||||||||| |||||  ||||||||||||| || ||||| | | |||| |||||||||   ||||| ||| ||||  ||||| || || |||||||||||    
T  41595240 aaaacatatccgtgaggaaattggtgattccaagttttgtatcattgtagatgaagctcgcgatgagtcacaaaaggaacaaatggctcttgtgttaaga 41595339  T
Q  124 tttgttaataaagctggttt 143  Q
    |||||| |||||| ||||||    
T  41595340 tttgttgataaagatggttt 41595359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 3091437 - 3091516
Alignment:
Q  151 tatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatatttta 232  Q
    ||||||||||||||||||||||||||| ||||  ||||||   |||||||  || ||||  |||||| ||||||||||||||    
T  3091437 tatgtagtttaaattttgaatgatcgaatttttgtttattacaacttaaa--tgatgtattcaatatcatttatatatttta 3091516  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 42005044 - 42005092
Alignment:
Q  216 atgatttatatattttagtttattttgatggcggtcatcccaaactttt 264  Q
    |||||||||||||||||||||||||| || || | ||||||||| ||||    
T  42005044 atgatttatatattttagtttatttttatagcagccatcccaaaatttt 42005092  T

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Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 142 - 266
Target Start/End: Original strand, 20099075 - 20099198
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttatttt 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||   |||||||||| |||||  |||||||| |||||||||||||||||||||    
T  20099075 tttatatattatgtagtttaa-ttttgaatgatcgatttttgattcattacaacttaaatgtattgtatgcaatatgaattatatattttagtttatttt 20099173  T
Q  242 gatggcggtcatcccaaactttttt 266  Q
    |||| ||  || |||||||||||||    
T  20099174 gatgacgaccaccccaaactttttt 20099198  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 33362110 - 33362229
Alignment:
Q  17 agggttagaaaacatattcgtgaaaaaattggtgattctaaattttgcagcgttgttgatgaagcttatgatgattcaaaaaataaacaactgact-ttg 115  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||  |||||| ||||||||  ||||| || || |||    
T  33362110 agggtgagaaaacatattcgtgaagaaattggtgattctaaattttgcatcgtcgttgatgaagctcgtgatgagtcaaaaaaggaacaaatggctcttg 33362209  T
Q  116 tgttaagatttgttaataaa 135  Q
    ||||||| |||||| |||||    
T  33362210 tgttaaggtttgttgataaa 33362229  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 271
Target Start/End: Original strand, 18427755 - 18427878
Alignment:
Q  148 tattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattttgatggc 247  Q
    |||||||||||||||||||||||  || |||||||| |||||    | ||||||||||||||  |||||||| ||| |||||||| ||||||||||||||    
T  18427755 tattatgtagtttaaattttgaacaattgatttttggtttataacaagttaaatgtgttgtatgcaatatgacttaaatattttattttattttgatggc 18427854  T
Q  248 ggtcatcccaaacttttttgtctg 271  Q
    |  || ||||||||||||||||||    
T  18427855 gaccaccccaaacttttttgtctg 18427878  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 33363795 - 33363847
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33363795 tttatatattatgtagtttaaattttgaatgattgatttttggtttattttga 33363847  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 194
Target Start/End: Original strand, 42809733 - 42809785
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttga 194  Q
    ||||||||||||||||||||||||||||||||| | |||||| ||||||||||    
T  42809733 tttatatattatgtagtttaaattttgaatgattggtttttggtttattttga 42809785  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 32382310 - 32382430
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaa-tatgatttatatattttagtttattt 240  Q
    ||||||||||||||||||||||||||||         ||||| ||||||   ||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  32382310 tttatatattatgtagtttaaattttga---------ttttggtttattacaacttaaatgtgttgtatgcaaatatgatttatatattttattttattt 32382400  T
Q  241 tgatggcggtcatcccaaacttttttgtctg 271  Q
    |  | |||| || |||||| |||||||||||    
T  32382401 t-tttgcggccaccccaaatttttttgtctg 32382430  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 271
Target Start/End: Original strand, 32436265 - 32436385
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaa-tatgatttatatattttagtttattt 240  Q
    ||||||||||||||||||||||||||||         ||||| ||||||   ||||||||||||||||  ||| |||||||||||||||||| |||||||    
T  32436265 tttatatattatgtagtttaaattttga---------ttttggtttattacaacttaaatgtgttgtatgcaaatatgatttatatattttattttattt 32436355  T
Q  241 tgatggcggtcatcccaaacttttttgtctg 271  Q
    |  | |||| || |||||| |||||||||||    
T  32436356 t-tttgcggccaccccaaatttttttgtctg 32436385  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Complemental strand, 27919169 - 27919111
Alignment:
Q  213 aatatgatttatatattttagtttattttgatggc-ggtcatcccaaacttttttgtct 270  Q
    |||||||||||||||||||| ||||||||||| ||  |||||| |||| ||||||||||    
T  27919169 aatatgatttatatattttaatttattttgatcgcaagtcatctcaaatttttttgtct 27919111  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 14384248 - 14384276
Alignment:
Q  221 ttatatattttagtttattttgatggcgg 249  Q
    |||||||||||||||||||||||||||||    
T  14384248 ttatatattttagtttattttgatggcgg 14384276  T

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Target: scaffold0285 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 240
Target Start/End: Complemental strand, 7812 - 7714
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    ||||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||||||| |||||  |||||||||||||||||||| ||||||||    
T  7812 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcaatatgatttatatattttggtttattt 7714  T

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Target: scaffold0054 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 3543 - 3641
Alignment:
Q  142 tttatatattatgtagtttaaattttgaatgatcgatttttgatttattttgacttaaatgtgttgtaaccaatatgatttatatattttagtttattt 240  Q
    ||||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||||||| |||||  || ||||||||||||||||| ||||||||    
T  3543 tttatatattatgtagtttaaattttgaacgattcgtttttggtttattacgacttaaatgtattgtatgcattatgatttatatattttggtttattt 3641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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