View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3403_high_15 (Length: 248)
Name: NF3403_high_15
Description: NF3403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3403_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 2424772 - 2425006
Alignment:
| Q |
14 |
tcatcatgtgttagttcaccacctttcccagcctaatataaatggagcaacaacaataatttggtcttaaaattcctaaacaattctagagttaaaatca |
113 |
Q |
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| T |
2424772 |
tcatcatgtgttagttcaccacctttcccagcctaatataaatggagcaacaacaataatttggtcttaaaattcctaaacaattctagagttaaaatca |
2424871 |
T |
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| Q |
114 |
ccaatcacattagtcttttggattcggcgaatttagtctctgaaattgtctcaaagccactgaatcaattgatcaatctnnnnnnncatgtagctatgat |
213 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
2424872 |
tcaatcacattagtcttttggacttggcgaatttagtctctgaaattgtctcgaagccactgaatcaattgatcaatctaaaaaaacatgtagctatgat |
2424971 |
T |
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| Q |
214 |
atatacctcattaccatgtaaatttacaagtgttt |
248 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
2424972 |
atatacctcattaccatgcaaatttacaagtgttt |
2425006 |
T |
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